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(quick notes from Translator E/P call)
Ideally all assertions would be made on species-specific proteins. However, this is not always possible, e.g NLP. Here PRO classes are used that are superclas…
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Hi,
biological reconstruction evidence terms mappings to GO evidence codes are inconsistent, as pointed out in another ticket #262
@alexsign and I propose the following mappings:
* ECO:0005…
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Please review the PAINT (PANTHER:PTN000941828) inference for Dmel HIPP1 (FBgn0037027):
GO:0004300 enoyl-CoA hydratase activity" annotation was assigned to D.mel HIPP1 (UniProt:Q9VPB0, M9PG20, M9PID3…
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**Describe the bug**
In my output files, the protein.tsv file contains some proteins that are not present in the peptide.tsv file or the [filename].tsv file. Can you explain to me what is going on?
…
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## ECO codes https://github.com/evidenceontology do not have a grouping designation
These ECO codes are seen in gpa files from ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/ and https://github.com/evide…
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Hi, Dear developer.
Because my species is plant, so it make no sense to use ortho gene to replace gene in human or mouse tbl file. And I also have different source motif file and want to merge thes…
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This is a continuation of https://github.com/nemoarchive/analytics/issues/104 and https://github.com/nemoarchive/analytics/issues/111
Tagging [carlocolantuoni](https://github.com/carlocolantuoni) t…
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Hi John,
I am working on plant genomes for which paleo-polyploidization is quite common. For example, many genomes from the sunflower family have undergone multiple rounds of polyploidization, alt…
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Hi
I have some different species' transcripts containing different isoforms (such as alternative splicing), and I want to infer their corresponding orthologues. So can I directly use orthofinder to…
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Hi Dr. Drost, @HajkD
The example works fine, and by use of the built-in data I could get a data frame of Divergence Stratigraphy.
```
test compute_dnds -> %dopar% ->
Execution halted
```
…