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May not want to perturb seeding, may want to keep it fixed! Shouldn't have to specify perturbations if you aren't perturbing it. That's not consistent with other parameters
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Thanks for sharing this inspiring work!
I noticed in "get_params_list_with_shape" function, "idx += length" is not added. Without this, it seems like $\mu_i$ and $s$ may not be correctly assigned f…
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So far, we can simulate the *E. coli* regulatory network using SERGIO in a "wild-type" scenario.
To simulate the *E. coli* regulatory network under a CRISPRa/i perturbation, we need to disconnect t…
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Hi! Another issue - also happy to help fix this one if a quick PR is helpful. I was doing some testing of a single perturbation before starting a long run of them, and found that when perturbations al…
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If the field has positive and negative anomalies as shown in the top next figure, the algorithm performs properly.
, with the question “is this code thread [safe]?”
The program has a race: it executes a `select…
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The DG discretization of equations in covariant form introduced in #47 uses the covariant basis vectors in **spherical coordinates** to compute the interface fluxes at each RHS evaluation: the state q…
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Thank you for the useful and timely survey! Our team also has a recent work on the robustness of T2I-DM titled "Defending Text-to-image Diffusion Models: Surprising Efficacy of Textual Perturbations A…
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I got CPA 0.8.2 and followed the tutorial "[Predicting single-cell response to unseen combinatorial CRISPR perturbations](https://cpa-tools.readthedocs.io/en/latest/tutorials/Norman.html)". **The goal…