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# Aim
Define the structure of the database that IDPConformerGenerator needs to read and mine in order to build the conformers.
This database represents the file or structure that stores the whol…
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There are other significant methods which have not (yet) been implemented, in particular the “[Ancient](https://en.wikibooks.org/wiki/I_Ching/The_Ancient_Yarrow_Stalk_Method)“ (Neo-Confucian reconstru…
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## Is your feature request related to a problem? ##
I'd like to directly compare AlphaFold predicted structures, datasets of PDBs and trajectories. LDDT https://academic.oup.com/bioinformatics/arti…
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While previously using `atomium` for parsing, `b_factor` on a per-model basis was available.
With the switch to `Biotite`, this is currently not available and `b_factor` is now taken from the firs…
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Fixing this will require some structural changes to how PDB header data is stored.
Migrated from redmine: https://redmine.open-bio.org/issues/2949
Paul Bathen wrote:
I don't know if this is consi…
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A video tutorial on this process can be found here: https://www.youtube.com/watch?v=ZnXBa9RdliU
![Untitled video (2)](https://github.com/TomkUCL/SARS-CoV-2-Helicase-nsp13-Public-Antivirals-Virtual-…
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Hello,
With a multimere as input (test.csv):
```
id,sequence
test,RQRNRCQYCRYRKCQSMGMKREGDT:RQRNRCQYCRYRKCQSMGMKREGDTTV
```
and using a local mmseqs2 API (--host-url parameter):
```
co…
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The GB computation works fine but for the PB it is stuck at 0 frames and prints the following note in the console:
> Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG …
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I have long arrays of short numbers in JSON. To give a small example:
[3.1, 15.2, -80.6, 40.7]
cbor.me converts it to 37 bytes (more than in the input!):
```
84 # array…
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Hello, we are running the software on a server and we are having some problems, as reported below:
Translate nucleic acid sequences
Error: mdb_env_open: No such file or directory
Translate nuclei…