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# Abstract
Cytoscape is an open-source software to visualize and analyze biological networks. Developers can add new features to Cytoscape by developing their own Java-based apps by utilizing the C…
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@bherr2 @axdanbol
While visualizing the v2p1 CSV at https://github.com/x-atlas-consortia/hra-pop/blob/main/output-data/v0.9.0/reports/atlas/validation-v2p1.csv, I noticed that the `as_label` for `sk…
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So there is some need to think about in silico MS/MS from a variety of proteomics and metabolomics sources. With real data, there is no need to think about parameters in generation because the data is…
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I noticed an issue with cancer study app shortcut generation in proteomics projects and discussed it with @mkuhring.
The "short" and "simple" version:
- The cancer study app is used in a proteomics p…
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Following issue #35, using integers in obs_names/var_names is allowed, yet slicing the objects is not possible after that. Could solutions for this particular exceptional case be discussed/added to th…
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Im looking to analyse my TMT data, my university proteomics core have used proteome discoverer and sent me the output of this. Can I still use Proteoviz for downstream analysis or does it have to be M…
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Hello, I was trying to cluster mzXML files from https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=88a7dfeeecb74131a6d6bfb7a9db0a46 in WSL:Ubuntu-22.04 but it does not seem to recognize any spectra.…
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E.g. for breast, colorectal, and ovarian, add "mass spectrometry based proteomics data from CPTAC [citation]."
jjgao updated
2 years ago
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The data types are:
- proteomics
- metabolomics
- transcriptomics
- cohort/clinical
FuqiX updated
2 years ago
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So this is quite unfortunate. Roughly every time it runs, it creates some duplicates.
```
$ bash no-dupes.sh
# Checking eu
Error! Duplicates!
4 "/Metabolomics/Msi analyte distribution/DO…