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The dataset types in the gEAR portal are nice and tidy:
```
mysql> select dtype, count(dtype) from dataset group by dtype;
+-----------------------+--------------+
| dtype | coun…
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@katyb @bherr2
I am adding this GH issue so we can track this feature request for the future.
From Yash:
Hey Andi, there are two different sources for protein biomarker expression values for …
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We should have a prototype of an SDRF definition for metabolomics data. EPMA will work with SDRF for the standard metadata for samples for proteomics and metabolomics, and in principle, the file forma…
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Many papers on mass-spectrometry based proteomics have shown the use of deep learning for intensity prediction, combining scores across search algorithms, retention time, collision corss section predi…
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@ulo please see:
https://github.com/compomics/ThermoRawFileParser
the tool is described in the following manuscript (preprint)
https://www.biorxiv.org/content/10.1101/622852v1.full
it would he…
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When using the OBI lookup service for terms relevant to targeted/untargeted metabolomics and proteomics assays used in MoTrPAC data, I wasn't able to find the terms for the following:
```
Targeted 3…
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The MC2 Center data model does not currently enable assay-specific metadata to be recorded. Adding these models is a critical part of supporting data sharing and reuse. Potential models to add were or…
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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
-- | -- | -- | -- | -- | -- | --
intron/spliceosom…
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### Version
1
### DataCap Applicant
Byte Tunneling
### Project ID
ByteTunneling_data_store_bc_fil_02
### Data Owner Name
U.S. National Library of Medicine
### Data Owner Country/Region
United…
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Hi there,
I'm new to proteomics analysis and R. I followed the tutorial on the website for the R package installation and completed the data entry. However, when I try to draw a heatmap with DEP2 …
EEnim updated
3 months ago