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We noticed that some references didn't format well and that it always happened when there was a consortium in the author list. Also, the consortium name was missing.
There is always the solution o…
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Need to curate some alternative transcript examples for Chado loading
can do some from the gene expression list:
gene expression, alternative splicing (3)
gene expression, alternative transcri…
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Hello, I am trying run your pipeline on single cell analysis, i have genome C57(maternal)* CAST(Paternal) and CAST(maternal) * C57(paternal) in this case how to use the command python3 python3/pre…
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A very common pattern in genetic analysis is to assume that there is exactly two alleles at each variant site. Datasets are then forced to be biallelic by conversion. I guess there's a few ways to do …
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Hi,
Thank you for providing TrEMOLO!
I got an error when running test data via singularity.
CHECKING R PACKAGES...
MAKE REPORT
Rscript -e "bookdown::render_book('index.Rmd', 'bookdown::gitbook'…
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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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Hi,
I am using Bayestyper to genotype my yeast strains after the clustering step but I'm getting an assertion failure error. I ran `bayestyper genotype` with the --noise-genotyping parameter due to…
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I use snippy 4.6.0 to calling my bacteria snp,but there are no result ,I wonder what to do next ,thanks.
snippy --outdir 135080RSH2439 --ref 175001_wt/175001R1qc_shovill.fasta --ctgs 135080RSH2439.fa…
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Implement algorithm for RT Relationship type inferred from .fam/.ped file
RT est un champ du fichier produit par la commande --genome
https://www.cog-genomics.org/plink2/ibd
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Hi all,
what os reference-fna in this case?
$bin/StrainPro-build -r reference-fna -o ref_idx [ref_idx is the output folder for BWT indexes]
Thanks for your help :)