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RAVEN should support writing a [cobrapy](http://cobrapy.readthedocs.io/en/latest/_autogen/cobra.io.yaml.html)-compatible yaml format, as this format is very concise.
- [x] make `writeYaml` function…
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Hi
I would like to try out pubtator and was running execute.sh and it gave an error:
```
~/pubtator$ python scripts/pubtator_to_xml.py --documents download/bioconcepts2pubtator_offsets.gz --out…
ghost updated
4 years ago
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Using test.php to check if the cron job is working (it would be nice if this were documented in the README), it worked fine for a person with 14 matches, but I get a "cannot create object error" when …
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Error In
[Parse Outgoing XML citations from website](https://github.com/titipata/pubmed_parser#parse-outgoing-xml-citations-from-website)
for a lot of the PMIDs this error is shown
![image](ht…
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```
When parsing DIP db (human only, PSI-MI 2.5,
ftp://dip.doe-mbi.ucla.edu/2014/mif25/Hsapi20140117.mif25.gz)
I am getting hundreds of warnings from
psidev.psi.mi.xml.dao.inMemory.InMemoryDAO clas…
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The REST2 transformer should scale the AMAP potentials along with the dihedrals.
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The reference page http://amigo.geneontology.org/amigo/reference/PMID:30352852 displays the article title as '[object Object]' rather than 'Evolutionarily conserved Tbx5- Wnt2/2b pathway orchestrates …
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We could support multiple ploidy. A column can only contain one vector, so storing the ploidy information there is difficult. However, we could simply add a ploidy column to the `$fam` slot of the `bi…
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Hello,
We use https://github.com/ontodev/robot tool to convert cellosaurus.obo into OWL format. And recently we tried to update this tool to the newest version. But we failed to do this because the …
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```
When parsing DIP db (human only, PSI-MI 2.5,
ftp://dip.doe-mbi.ucla.edu/2014/mif25/Hsapi20140117.mif25.gz)
I am getting hundreds of warnings from
psidev.psi.mi.xml.dao.inMemory.InMemoryDAO clas…