-
Empress needs to be run against a huge tree (> 1 million tips)
-
Just came across your paper [here](https://www.ncbi.nlm.nih.gov/pubmed/30807567) and it looks like a very cool idea.
I would like to give this tool a try, however, I don't see any documentation on …
-
### Title
16s Metagenomic analysis of Gut Microbiome
### Leaders
Dipankar Bachar
### Collaborators
_No response_
### Brainhack Global 2022 Event
Brainhack Marseille
### Projec…
-
**TODO**
- [x] add tests
- [x] expose parameters useful in Q2 context
**Addition Description**
Allow using SINA to align to reference (i.e. GreenGenes or SILVA)
**Current Behavior**
On…
-
Hello,
I think I've finally found the issue and the right place to post it, but apologies if I'm mistaken.
It appears that when you have `R` installed from `conda-forge` and a system R (say RStu…
-
Hey Madi,
Nice work on this. Some things I'd recommend:
1. When creating the output paths in your snakefile, I'd recommend using `os.path.join()` rather than `+` on the strings, as that would be…
-
**Bug Description**
dada2-paired appears to drop samples which have 0 sequences after filtering, or perhaps denoising, but keeps samples which have zero sequences from merging and beyond.
This lea…
-
While running following command
nextflow run main_AMR++.nf -profile conda
N E X T F L O W ~ version 24.04.3
Launching `main_AMR++.nf` [elegant_gauss] DSL2 - revision: f6bfe39b99
A M R …
-
**Improvement Description**
Upgrade to the vegan function `adonis2` to access additional functionality unavailable in adonis1.
To quote @mestaki :
>The most important benefit would be that adonis…
-
Hi @Meghana9854 @roseedwin , I just came across your amazing paper, and I wanted to implement the approach you proposed for my soil shotgun data. Looking upon your methodology, it seem you relied on a…