qiime2 q2-dada2 issues - Githubissues

qiime2 / q2-dada2

QIIME 2 plugin wrapping DADA2

BSD 3-Clause "New" or "Revised" License

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issues

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Use ConfigParser instead of SafeConfigParser

#166 athos-ribeiro closed 1 month ago
1
Add warning when pooling method and chimera detection method are misaligned

#165 benjjneb opened 2 months ago
1
MAINT: add threads/jobs primitives

#164 colinvwood closed 5 months ago
0
Can not run qiime dada2 denoise-ccs without primers or adapters

#163 cherman2 opened 7 months ago
2
CI: Updates to ci-dev workflow

#162 hagenjp closed 9 months ago
0
CI: add additional tests in commands section

#161 lizgehret closed 11 months ago
0
CI: testing

#160 lizgehret closed 1 year ago
0
Importing DADA2 R rep. sequences into QIIME2

#159 dixi06 closed 1 year ago
1
ENH: include error model plots in denoise-* output

#158 nbokulich opened 1 year ago
0
maint: increase trunc length for smaller demux input

#157 lizgehret closed 1 year ago
0
expose dada parameters band_size and kdist_cutoff

#156 sjanssen2 closed 1 year ago
3
pin: bioconductor-dada2 1.26.0

#155 lizgehret closed 1 year ago
0
dep: adding r-base

#154 lizgehret closed 1 year ago
0
imp: adding R traceback for better error handling

#153 lizgehret closed 1 year ago
0
ex: adds usage examples for Hacktoberfest

#152 lizgehret closed 1 year ago
0
dep: rebuild for biom-format 2.1.12

#151 thermokarst closed 2 years ago
0
error while using dada2 in qiime2

#150 NainaK6 closed 2 years ago
1
dep: pin biom

#149 thermokarst closed 2 years ago
0
Dada2 restructuring

#148 jordenrabasco closed 2 years ago
15
Restructuring dada2 R/python code

#147 jordenrabasco closed 2 years ago
0
Support allowOneOff option in removeBineraDenovo()

#146 leasi closed 2 years ago
8
DEP: dada2 1.22.0

#145 Keegan-Evans closed 2 years ago
1
ci: update recipe

#144 thermokarst closed 2 years ago
0
ci: library integration

#143 thermokarst closed 2 years ago
0
Revert "hack: disable tests to flush ci system"

#142 thermokarst closed 3 years ago
0
dep/pin: r-matrix 1.3-2

#141 thermokarst closed 3 years ago
1
well well well

#140 thermokarst closed 3 years ago
0
implemented fix to dada2 dropping blank samples.

#139 dwthomas closed 7 months ago
13
implemented fix to dada2 dropping blank samples.

#138 dwthomas closed 3 years ago
0
new: python 3.8

#137 thermokarst closed 3 years ago
0
dada2 drops samples without reads unfiltered reads from table but not denoising stats.

#136 dwthomas opened 3 years ago
1
add support for Pacbio CCS reads

#135 sixvable closed 2 years ago
9
MAINT: update DADA2 to v1.18.0

#134 ebolyen closed 3 years ago
2
Update to latest DADA2 for R 4.0 support

#133 ebolyen closed 3 years ago
1
Fix linting error

#132 andrewsanchez closed 4 years ago
0
minor typo

#131 mortonjt closed 4 years ago
2
Issue 117

#130 Oddant1 closed 3 years ago
5
dada2 justConcatenate

#129 ARW-UBT opened 4 years ago
6
BUG: fix single sample recognized as empty table

#127 ebolyen closed 4 years ago
1
Setting "allowOneOf" and "maxMismatch" parameters in q2/dada2 plugin

#126 francis29029 closed 4 years ago
1
Ids mixed with barcodes

#125 Oddant1 closed 1 year ago
13
MAINT: Update min-overlap to 12

#124 Oddant1 closed 4 years ago
0
Update denoise-paired document from minimum overlap 20 > 12nt

#123 mestaki closed 4 years ago
0
Pseudo pool

#122 benjjneb closed 4 years ago
5
IMP: Expose new match_ids parameter

#121 Oddant1 closed 4 years ago
5
IMP: Add new percentage-merged column to denoise-paired output

#120 Oddant1 closed 4 years ago
10
Error in sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))

#119 Preve92 closed 10 months ago
13
denoise-paired: expose matchIDs parameter

#118 colinbrislawn closed 4 years ago
3
expose minOverlap parameter

#117 nbokulich closed 3 years ago
10