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qiime2
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q2-dada2
QIIME 2 plugin wrapping DADA2
BSD 3-Clause "New" or "Revised" License
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denoise-paired: expose matchIDs parameter
#118
colinbrislawn
closed
4 years ago
3
expose minOverlap parameter
#117
nbokulich
closed
3 years ago
10
maxEE_f/r for denoising paired-end reads
#116
angrybee
closed
5 years ago
0
denoise-paired: add % merged to stats output
#115
nbokulich
closed
4 years ago
0
I've gone through tutorials and forums and still don't understand how to select the truncLen and trim parameters in dada2
#114
milenapi
closed
5 years ago
1
Update for dada2 package version 1.10
#113
benjjneb
closed
5 years ago
10
Update to dada2 1.8.0; drop osx pins
#112
epruesse
closed
5 years ago
10
MAINT: Travis, bump to python 3.6
#111
thermokarst
closed
5 years ago
0
MAINT: Updating for python 3.6
#110
thermokarst
closed
5 years ago
0
MAINT: Updating copyright headers for 2019
#109
ChrisKeefe
closed
5 years ago
0
HACK: more pins
#108
thermokarst
closed
5 years ago
0
HACK: pin biostrings
#107
thermokarst
closed
5 years ago
0
Revert "Update DADA2 1.8.0 (#103)"
#106
thermokarst
closed
5 years ago
0
TST: Updating test data for dada2 1.8
#105
thermokarst
closed
5 years ago
4
Update for flake8 v3.6
#104
ChrisKeefe
closed
5 years ago
0
Update DADA2 1.8.0
#103
ebolyen
closed
5 years ago
3
Certain ID schemes can become mixed up with barcodes during sorting
#102
ebolyen
closed
1 year ago
3
Add long-read support
#101
benjjneb
closed
1 year ago
27
Allow denoise-single to process either reverse or forward reads
#100
mestaki
closed
5 years ago
3
Add more DADA2 parameters to the wrapper
#99
apcamargo
closed
5 years ago
3
Improve summary for merging paired reads
#98
antgonza
closed
5 years ago
4
Improved error reporting for malformed paired-end reads
#97
ConstantinoSchillebeeckx
opened
6 years ago
0
ENH: write denoising stats to artifact
#96
ebolyen
closed
6 years ago
3
DOC: move citation to new API
#95
ebolyen
closed
6 years ago
0
Add citations
#94
ebolyen
closed
6 years ago
0
denoise-paired: add flag for just concatenating paired reads
#93
AstrobioMike
opened
6 years ago
0
denoise-*: expose `--collapse-no-mismatch` parameter
#92
nbokulich
opened
6 years ago
10
ENH: denoise_pyro
#91
thermokarst
closed
6 years ago
3
Error in isBimeraDenovoTable(unqs[[i]], ..., verbose = verbose) : Input must be a valid sequence table.
#90
bassio
closed
6 years ago
1
Don't break when chimera removal is turned off
#89
benjjneb
closed
6 years ago
0
Turning chimera checking off breaks the plugin
#88
benjjneb
closed
6 years ago
1
Add pooling options to Q2 workflows
#87
benjjneb
closed
11 months ago
8
Add an explicit error for return code -9
#86
ebolyen
opened
6 years ago
4
Upgrade to DADA2 >= 1.7.3
#85
thermokarst
closed
5 years ago
21
Upgrading to 2017.12 breaks `q2-dada2`/`dada2`
#84
jakereps
closed
5 years ago
8
MAINT: update copyright year; travis
#83
ebolyen
closed
6 years ago
1
BUG: change SSE mode to avoid segfault
#82
ebolyen
closed
6 years ago
1
VER: 2017.12.1.dev0
#81
thermokarst
closed
6 years ago
0
Segfault errors in 2017.12 plugin version
#80
benjjneb
closed
6 years ago
13
Create report visualizer
#79
thermokarst
closed
6 years ago
6
Update Q2-DADA2 to the new (1.6.0) R package release version
#78
benjjneb
closed
6 years ago
7
Report number or fraction of reads that pass each step
#77
benjjneb
closed
6 years ago
12
adding 454/ion torrent support
#76
gregcaporaso
closed
6 years ago
2
MAINT: update version pin
#75
ebolyen
closed
6 years ago
1
conda installed dada2 is slow
#74
benjjneb
closed
6 years ago
19
BLD: Makefile support
#73
thermokarst
closed
7 years ago
0
expose minimum-length parameter?
#72
jairideout
closed
5 years ago
5
ENH: prettier error with return code
#71
ebolyen
closed
7 years ago
0
BUG: `trunc_len=0` now allowed
#70
thermokarst
closed
7 years ago
1
Error bubbling or better error documentation
#69
maxvonhippel
closed
7 years ago
19
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