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qiime2
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q2-dada2
QIIME 2 plugin wrapping DADA2
BSD 3-Clause "New" or "Revised" License
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IMP: make reverse primer (adapter) optional for denoise-ccs
#168
colinvwood
closed
3 weeks ago
0
BUG: Empty samples
#167
Oddant1
closed
1 month ago
1
Use ConfigParser instead of SafeConfigParser
#166
athos-ribeiro
closed
3 months ago
1
Add warning when pooling method and chimera detection method are misaligned
#165
benjjneb
opened
4 months ago
1
MAINT: add threads/jobs primitives
#164
colinvwood
closed
7 months ago
0
BUG:Can not run qiime dada2 denoise-ccs without primers or adapters
#163
cherman2
opened
9 months ago
6
CI: Updates to ci-dev workflow
#162
hagenjp
closed
11 months ago
0
CI: add additional tests in commands section
#161
lizgehret
closed
1 year ago
0
CI: testing
#160
lizgehret
closed
1 year ago
0
Importing DADA2 R rep. sequences into QIIME2
#159
dixi06
closed
1 year ago
1
ENH: include error model plots in denoise-* output
#158
nbokulich
opened
1 year ago
3
maint: increase trunc length for smaller demux input
#157
lizgehret
closed
1 year ago
0
expose dada parameters band_size and kdist_cutoff
#156
sjanssen2
closed
1 year ago
3
pin: bioconductor-dada2 1.26.0
#155
lizgehret
closed
1 year ago
0
dep: adding r-base
#154
lizgehret
closed
1 year ago
0
imp: adding R traceback for better error handling
#153
lizgehret
closed
1 year ago
0
ex: adds usage examples for Hacktoberfest
#152
lizgehret
closed
1 year ago
0
dep: rebuild for biom-format 2.1.12
#151
thermokarst
closed
2 years ago
0
error while using dada2 in qiime2
#150
NainaK6
closed
2 years ago
1
dep: pin biom
#149
thermokarst
closed
2 years ago
0
Dada2 restructuring
#148
jordenrabasco
closed
2 years ago
15
Restructuring dada2 R/python code
#147
jordenrabasco
closed
2 years ago
0
Support allowOneOff option in removeBineraDenovo()
#146
leasi
closed
2 years ago
8
DEP: dada2 1.22.0
#145
Keegan-Evans
closed
2 years ago
1
ci: update recipe
#144
thermokarst
closed
3 years ago
0
ci: library integration
#143
thermokarst
closed
3 years ago
0
Revert "hack: disable tests to flush ci system"
#142
thermokarst
closed
3 years ago
0
dep/pin: r-matrix 1.3-2
#141
thermokarst
closed
3 years ago
1
well well well
#140
thermokarst
closed
3 years ago
0
implemented fix to dada2 dropping blank samples.
#139
dwthomas
closed
9 months ago
13
implemented fix to dada2 dropping blank samples.
#138
dwthomas
closed
3 years ago
0
new: python 3.8
#137
thermokarst
closed
3 years ago
0
dada2 drops samples without reads unfiltered reads from table but not denoising stats.
#136
dwthomas
opened
3 years ago
1
add support for Pacbio CCS reads
#135
sixvable
closed
2 years ago
9
MAINT: update DADA2 to v1.18.0
#134
ebolyen
closed
3 years ago
2
Update to latest DADA2 for R 4.0 support
#133
ebolyen
closed
3 years ago
1
Fix linting error
#132
andrewsanchez
closed
4 years ago
0
minor typo
#131
mortonjt
closed
4 years ago
2
Issue 117
#130
Oddant1
closed
3 years ago
5
dada2 justConcatenate
#129
ARW-UBT
opened
4 years ago
6
MAINT: Update copyright headers to 2020
#128
David-Rod
closed
4 years ago
0
BUG: fix single sample recognized as empty table
#127
ebolyen
closed
4 years ago
1
Setting "allowOneOf" and "maxMismatch" parameters in q2/dada2 plugin
#126
francis29029
closed
4 years ago
1
Ids mixed with barcodes
#125
Oddant1
closed
1 year ago
13
MAINT: Update min-overlap to 12
#124
Oddant1
closed
4 years ago
0
Update denoise-paired document from minimum overlap 20 > 12nt
#123
mestaki
closed
4 years ago
0
Pseudo pool
#122
benjjneb
closed
4 years ago
5
IMP: Expose new match_ids parameter
#121
Oddant1
closed
4 years ago
5
IMP: Add new percentage-merged column to denoise-paired output
#120
Oddant1
closed
4 years ago
10
Error in sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
#119
Preve92
closed
11 months ago
13
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