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qiime2
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q2-dada2
QIIME 2 plugin wrapping DADA2
BSD 3-Clause "New" or "Revised" License
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36
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A workaround for q2-dada2 and a local R installation with dada2
#68
ebolyen
closed
6 years ago
9
trunc_len=0 can't be used
#67
gregcaporaso
closed
7 years ago
1
Variable length amplicons
#66
benjjneb
closed
7 years ago
1
BUG: fix cross-device fs usage
#65
ebolyen
closed
7 years ago
0
Add support for variable amplicon lengths
#64
benjjneb
closed
7 years ago
1
Improved truncLen error message
#63
maxvonhippel
closed
7 years ago
2
DOC: add plugin description
#62
gregcaporaso
closed
7 years ago
0
MAINT: update to dada2 1.4.0
#61
ebolyen
closed
7 years ago
4
MAINT: Remove `plot-qualities` visualizer
#60
thermokarst
closed
7 years ago
2
delete `plot-qualities` visualizer in favor of `qiime demux summarize`
#59
gregcaporaso
closed
7 years ago
0
BUG: fix handling of IDs with underscores
#58
ebolyen
closed
7 years ago
0
Update plugin to 1.4.0 R package
#57
benjjneb
closed
7 years ago
0
Use DADA2 1.4 to fix quality-score precedence bug in parameters
#56
ebolyen
closed
7 years ago
2
CI/CD: Support for automation
#55
ebolyen
closed
7 years ago
0
Add smoketests and rename parameter
#54
ebolyen
closed
7 years ago
2
Chimera options
#53
benjjneb
closed
7 years ago
5
Add truncLen requirements to the denoise-paired help text
#52
benjjneb
closed
7 years ago
1
Split filtering into its own command?
#51
benjjneb
opened
7 years ago
7
Add chimera filtering options
#50
benjjneb
closed
7 years ago
3
resolve potential bug related to missing filtered samples
#49
jairideout
closed
7 years ago
1
qiime dada2 denoise-paired open up options for percent mismatch and overlap length
#48
shiffer1
closed
7 years ago
12
TST: adds coverage testing and reporting to Travis CI
#47
gregcaporaso
closed
7 years ago
1
Verify that sample-ids with underscore characters are preserved
#46
ebolyen
closed
7 years ago
3
`qual-plots`: Specify samples to plot
#45
thermokarst
closed
7 years ago
2
MAINT: update to 2017.3.0.dev0
#44
ebolyen
closed
7 years ago
0
can `trim-left` and `trunc-len` be made optional and default to no trimming/truncation?
#43
gregcaporaso
closed
7 years ago
7
MAINT: remove changelog
#42
gregcaporaso
closed
7 years ago
0
REL: Promote 2017.2.0.dev0 to 2017.2.0
#41
thermokarst
closed
7 years ago
0
ENH: adds tests, arg validation, and filter errors
#40
ebolyen
closed
7 years ago
2
BUG: errR undefined in certain cases
#39
ebolyen
closed
7 years ago
0
dada2 denoise-paired-end run failed with default `n-reads-learn` (i.e., 1,000,000), but not with `n-reads-learn=10000`
#38
gregcaporaso
closed
7 years ago
0
add input/output/parameter help text
#37
gregcaporaso
closed
7 years ago
0
Paired end python
#36
ebolyen
closed
7 years ago
1
New R scripts fail when run on single fastq files
#35
benjjneb
closed
7 years ago
0
Paired end workflow
#34
benjjneb
closed
7 years ago
2
test latest dada2 bioconda package when available
#33
jairideout
closed
7 years ago
2
Expectations for primer removal in Q2?
#32
benjjneb
closed
6 years ago
7
Learn error rates from a subset of the data
#31
benjjneb
closed
7 years ago
3
ENH: new date-based versioning; `qiime` -> `qiime2` package rename
#30
thermokarst
closed
7 years ago
0
BUG: fixed signature ordering for `plot`
#29
ebolyen
closed
7 years ago
0
MAINT: Bump version to 0.0.7.dev0
#28
thermokarst
closed
7 years ago
0
png files are not present in plot-qualities qzv on headless machines
#27
gregcaporaso
closed
7 years ago
1
Rplots.pdf generated in working directory by plot-qualities
#26
gregcaporaso
closed
7 years ago
2
add license to setup call in setup.py
#25
gregcaporaso
closed
7 years ago
1
MAINT: 0.0.6.dev
#24
jairideout
closed
7 years ago
0
Dev version bump
#23
gregcaporaso
closed
7 years ago
1
REL: version bump (0.0.6)
#22
gregcaporaso
closed
7 years ago
0
Update to canonical urls
#21
jairideout
closed
7 years ago
0
More filtering parameters
#20
benjjneb
closed
7 years ago
2
add quality filtering options
#19
sejsong
closed
7 years ago
0
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