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Hi there!
I had another question about the output reads. I stimulated hifi reads from a genome using pbsim3 and ccs. Is it possible for me to know where in the genome did the read came from? I know…
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Hi,
I am circling back to Biobloomtools, hoping to use it for a contamination screening.
Could you please provide more info on whether it's possible to use it for long reads and what the FPR and K…
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Hello, I run smoove v.0.2.6 within a pipeline https://github.com/antonkulaga/dna-seq, in a container.
To the moment I got two different samples ended up with the same error result. Input bam sequence…
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Apparently Illumina uses the Q=2 quality score as a "Read Segment Quality Control Indicator". I can't find any recent mentions of this on Illumina's website. One document from 2011 describes it as:
>…
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[mix](https://www.nextflow.io/docs/latest/operator.html#mix) output channels from different aligners to allow users to produce results using multiple methods concurrently.
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**Are you using the latest release?**
Yes
**Describe the bug**
I have switched to mysql from sqlite because sqlite takes so long to run. Train keeps failing at the PASA step, due to an inability …
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Hello,
I'm helping some researchers analyse some zebrafish data and just discovered the zebrafish STAR index (danRer11) in EU contains the alternative haplotypes. Afaik the alts shouldn't be incl…
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I've experienced a memory leak when using the python `mappy.Aligner` when initialized with a sequence file/FASTA (this is within [Megalodon](https://github.com/nanoporetech/megalodon)). This same memo…
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We may need to do an after-magicBLAST cleanup, where we extract the reads and pairs back out of the original SRA. Duplications and unpaired reads may be throwing off the aligners. Unpaireds may be i…