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Hi there,
We came across an issue when trying to run GWAS for multiple phenotypes at once using Regenie 2.2.4 and is hoping you could help us troubleshoot.
When we ran the program, it gave an er…
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Here is an interesting unexpected thing. You can find REGENIE generated extra 4 lines for chr4 (UKB imputed array), rs530960215 is the last SNPs, but I don't know why REGENIE have extra 4 line result …
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Hi!
I want to create the mask with variants from different chromosomes (pathway-based rare variants association). I've found in one of the closed issues the GENPOS in the variants set file doesn't af…
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I was wondering whether it's possible to compile REGENIE using a CUDA-compatible compiler (e.g. "nvcc")? If so, would we need CUDA-specific libraries (e.g. MKL) to be able to get REGENIE to make effec…
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hi, i tried running
```bash
gcloud storage cp gs://r7_data/pheno/R7_COV_PHENO_V2.txt.gz .
```
this is the example file in the README
but it says that my gmail doesn't have access:
```bash
ERR…
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Hello,
I wanted to report a possible issue that I can't quite nail down. The issue is both complex and limited to a very specific use-case within the UKBiobank platform supplied by DNANexus. It req…
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Hello,
would it be possible to create a public (and official) image of Regenie on Docker hub?
I use Regenie on a shared computing cluster that uses Singularity, not docker. Hence we can only pull …
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Hi @joellembatchou,
So I'm running regenie for UKB data while using the burden/skat-o options.
I was wondering if there's any workaround to include variants in which the REF allele is actually …
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Here's an overview of the work I'd like to do with @jdstamp to get this section together. I started writing it up as an email but figured I'd post it here for visibility.
- High-level goal: enumera…
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Hi everyone,
I performed an analysis with REGENIE on 2058 patients with a quantitative trait and 7 different covariates. For 5 SNPs I reached a p-value < 5x10-8.
I repeated the linear regressi…