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The HCP/DCAN output data was already smoothed at 2mm FWHM, according to the "Handbook of Functional MRI Data Analysis" by Poldrack et al., the additional smoothing would cause more smoothing than what…
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## Bug report
Hi, I was trying to do registration of our large image data using Bigsteam2 in EASI-FISH Pipeline, I changed most parameters exposed, including:
--bigstream_global_steps…
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Hello,
The SAW (version: 7.0) pipeline stopped at the step of image registration and threw an error as shown below:
Please help me at your convenience.
Thanks!
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#### Description:
If an operator does not have 1 registered operation, registration tile's Register an Operation link has an "action required" notification and reporting and COAM tiles are hidden
#…
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#### Dependencies
- Blocked by
- Blocking
#### Description:
For the MVP, as an external user, I have a Report a Closure/Transfer tile in my Registration dashboard and when I click on it, it takes me…
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#### Dependencies
Reporting can use the modal that Registration implements in bcgov/cas-registration#2169
#### Description:
As an industry user, if I select a report type and begin filling out m…
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| Required Info | …
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I've encountered bugs with image registration a number of times when moving between data and generally doing processing. Sometimes it's been hard to keep track of what exactly I've done to recreate th…
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Hi, STOmics developer,
I am running the stereoPipeline_v7.1_manual_part2.sh. It always exited at the step cell_cluster and throw the Error message as " The number of threads must be between 1 an…
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Many current bigstream users are working with Jupyter notebooks given to them by Greg (me). Parameters for various steps in their registration pipeline are defined throughout the notebook. First, an u…