JaneliaSciComp bigstream issues

JaneliaSciComp / bigstream

Tools for distributed alignment of massive images

BSD 3-Clause "New" or "Revised" License

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issues

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Remove dependency on pynrrd

#51 GFleishman opened 2 months ago
0
Added support for logging

#50 cgoina opened 3 months ago
1
Transforming coordinates with saved affine matrix does not match transformed volume

#49 RuihanZhang2015 opened 3 months ago
0
Bug fix: default background setting for level_set.foreground_segmentation is not good

#48 GFleishman opened 4 months ago
0
Feature request: make logging print outs optional with a verbose parameter

#47 GFleishman opened 4 months ago
0
Feature request - refactor example notebooks so all parameters are automatically findable

#46 GFleishman opened 4 months ago
1
Two feature-requests: virtual masking, and origins for distributed functions

#45 GFleishman closed 4 months ago
4
Defaults dictionaries for all optimizers and metrics

#44 GFleishman closed 4 months ago
1
Feature request: exceptions when alignment fails

#43 krokicki opened 5 months ago
1
check mov_mask for foreground

#42 orena1 closed 4 months ago
7
code to be used by the Bigstream nextflow module

#41 cgoina closed 6 months ago
2
spelling mistake

#40 orena1 closed 4 months ago
1
variable spelling mistake

#39 orena1 closed 9 months ago
0
variable spelling mistake

#38 orena1 closed 9 months ago
1
add the ability to accept multi-dim raiuds

#37 orena1 closed 9 months ago
1
error message when blob_sizes are erroneous

#36 orena1 closed 9 months ago
1
dask variables do not fit LocalCluster

#35 orena1 opened 9 months ago
3
spelling mistake - variable name

#34 orena1 closed 9 months ago
0
Add links for the datasets for the notebooks

#33 orena1 closed 9 months ago
0
data for rnr-exm_notebooks

#32 orena1 closed 9 months ago
1
bigstream.level_set.foreground_segmentation should not force only the largest connected component

#31 GFleishman closed 10 months ago
0
pulling from master

#30 GFleishman closed 10 months ago
0
Fix `NameError` by importing `psutil` in `utility.py`

#29 mansouralawi closed 11 months ago
1
`NameError` due to missing `psutil` import in `bigstream.utility`

#28 mansouralawi closed 11 months ago
1
updated defaults for easifish_registration_pipeline

#27 GFleishman closed 10 months ago
2
Cosmetic changes and refactors, docstring updates

#26 GFleishman closed 11 months ago
2
Misalignment of high res image.

#25 kenjp1223 closed 1 year ago
0
make parameter filtering optional

#24 vruetten closed 1 year ago
1
adding option to not gaussian filter transforms in motion_correct

#23 vruetten closed 11 months ago
2
Global RANSAC affine -- difference between return default and skip?

#22 FangmingXie closed 1 year ago
1
rerunning the same code block in jupyter notebook

#21 FangmingXie closed 11 months ago
4
global RANSAC affine -- insufficient fixed spots found

#20 FangmingXie opened 1 year ago
3
timing analysis on the RnR-ExM challenge

#19 rohitrango closed 1 year ago
3
easifish tutorial: issue with unknown kwargs

#18 HomoPolyethylen closed 9 months ago
9
syntax error in PyPI version

#17 HomoPolyethylen closed 1 year ago
2
add local changes

#16 seanmcculloch closed 1 year ago
1
code bug

#15 cindy12-gao opened 1 year ago
2
Shouldn't prepare_piecewise_ransac_affine take into consideration mov/fix spacing?

#14 orena1 closed 1 year ago
1
get_spot_context is not suited for images with different dimentation

#13 orena1 closed 9 months ago
2
add documentation to ransac_affine

#12 orena1 closed 9 months ago
4
Local affine aligments

#11 IamJuanHilario closed 1 year ago
1
A tutorial error

#10 SoichiroA opened 2 years ago
0
Write identity matrices and warping fields for non-overlapping chunks

#9 wangyuhan01 closed 4 months ago
1
grid pattern misalignment after local affines

#8 tatz-murakami opened 2 years ago
2
Bigstream deformable registration

#7 neugun closed 9 months ago
1
User supplied key points

#6 miketaormina opened 3 years ago
0
Providing spot coordinates to `ransac_affine`

#5 miketaormina closed 3 years ago
3
can't find function dog_ransac_affine

#4 mkunst23 closed 3 years ago
1
problem loading tutorial data

#3 mkunst23 closed 3 years ago
3
Issues with tile-wise registration when two image volumes have large offset (bigstream_prototype)

#2 wangyuhan01 closed 9 months ago
2