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Hi,
Many Bioconductor packages store single-cell RNASeq data in sparse matrices in-memory. It seems like currently, rhdf5::h5writeDataset does not support a sparse matrix as input. For smaller mat…
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Hello,
Do you know when a new release will be released? Version 0.30.0 is not working as it is.
The error "Error: package or namespace load failed for ‘sleuth’:
object ‘h5write.default’ is not exp…
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In MATLAB v7.3 and above, there's a new MAT file format labelled ["v7.3"](http://se.mathworks.com/help/matlab/import_export/mat-file-versions.html) and are saved in MATLAB using version argument `-v7.…
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If using rhdf 2.30.1 then the tests in `test_bam_to_h5.R` and `test_bam_to_h5.R` all pass without warnings. If using rhdf 2.34.0 then warnings will be issued when running the `secondary_id=ID` test (t…
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### Ongoing data dictionary for land and river hdf5 files, as well as useful rhdf5 commands.
### Missing or Yet To Be Found
- Withdrawals. In the UCI, they are stored under the `EXT SOURCE` block…
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Hello,
I am facing some issues when I try to use ARA and pyramid plot functions.
### For the ARA here is my script:
**library(GENOVA)
library(rhdf5)
library(strawr)
setwd('/gpfs/data/Herna…
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Hello,
When I try to create a snap object with the following command
```
x.sp = createSnap(
file=c("RJ_ATACseq_from_cellranger.snap"),
sample=c("Pancreas_190724"),
num.cores=1
)
```
it …
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```
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: powerpc-apple-darwin10.8.0 (32-bit)
R is free software and comes …
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In my set up, `shar/sel0/mpro1/Plate_Pb210/011835.h5` has a "tt" field that is an ExternalLink to the "tt" field of `tt/sel0/mpro1/Plate_Pb210/011835.h5`. If the target is a symlink, h5py cannot reso…
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Is it possible to expose the `h5repack` tool (https://support.hdfgroup.org/HDF5/doc/RM/Tools.html#Tools-Repack) for use within R?
Background: I deleted a dataset from a HDF5 file and learnt that d…