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Hi,
Thank you for the recent comment on #167 .
I took your suggestion and this time I tried on a Mac which never had ORFik and installed from GitHub.
There is an error which I have not encoun…
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Hi Fabio,
I am trying to run riboWaltz on galaxy.eu. The transcriptome-mapped.bam file was generated by RNA STAR, using the built-in index and hg38 on the Galaxy server, and gencode.v43.basic.anno…
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### Description of feature
We need both transcriptome and genome alignment for use by different modules associated with Riboseq. This can be adapted from what nf-core/riboseq does.
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Hi,
I have gone through your new bioarxiv article. I was wondering if the results shown in `"supplementary table a10: RIBO-former performances for merged data sets."` were still viable since it seeme…
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Dear @Alistair-Turcan and @aaronwacholder,
Thank you for creating iRibo! I'd like to use your software to predict actively translated ORFs in a genome, but I stumbled upon a segmentation fault erro…
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### Description of feature
In nf-core/modules and then here. See https://github.com/zhpn1024/ribotish?tab=readme-ov-file#predict.
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### Description of feature
Add the Ribo_TISH quality module to nf-core/modules and then here. See https://github.com/zhpn1024/ribotish?tab=readme-ov-file#quality.
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Hello,
I have been using Ribotricer in my project for quite a while now and I couldnt fully understand the part where ribotricer is agnostic the to the frame. Lot of statistical approaches to ORF …
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Hi,
Using my own RiboSeq data I'm trying to work out the ribowaltz package. I am trying to add some information to the psites, but keep getting an error.
As far as I can figure the error, it is n…
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**Is your feature request related to a problem? Please describe.**
Minimum metagene coverage is essentially hard-coded, since a default value is set [here](https://github.com/smithlabcode/ribotrice…