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Hi,
Based on [FindNeighbors](https://satijalab.org/seurat/reference/findneighbors), it seems that the function only depends on embeddings, rather than the counts/normalized counts. So I suppose t…
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Hi,
Could please you add the RNA families to the JSON files?
This would be a helpful information to split a validation set.
Thanks in advance!
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GO:0000433 carbon catabolite repression of transcription from RNA polymerase II promoter by glucose
GO:0000437 carbon catabolite repression of transcription from RNA polymerase II promoter
GO:0001…
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https://github.com/MariaSukhorukova304/-/blob/3e537920a7f012f3adfec56b94f25e3aa894425f/OOP/DNA%2BRNA#L2-L3
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https://github.com/ykiix/repykiix/blob/93b7f3e9f1571472afb60ca35cb342acfc5d3d90/dnaver2.py#L2-L16
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Having difficulty converting h5Seurat to Anndata.
Had similar issues to #27 in the SaveH5Seurat step(), resolved by FindVariableFeatures() suggestion.
Now having issues with the Convert() step:
```…
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Hi,
I'm wondering if it's possible to use NanoMethViz to visualise RNA methylation data, e.g. using methylation probability output from m6Anet? Especially as ONT are now including m6A base-calling …
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https://github.com/Daria-Brattseva/PhystechPython/blob/0bc7b6d653c43132579a543ec1874b0a6b1158b3/Task4-DNA.py#L3-L4
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We should next extract RNA and run qPCR for the remaining LCO project samples given that we [found differential expression in the seed and spat samples run previously](https://github.com/RobertsLab/re…