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Missing reference data for the following tools:
- RNA-STAR
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There seems to be an extra step calling fastqc twice. Fastqc is designed to both fastqcs, you don't have to call it twice.
[(1) ](https://carpentries-incubator.github.io/cwl-novice-tutorial/03-depen…
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Hello, I encountered this error while running CeleScope.
Exiting because of *FATAL ERROR*: could not create FIFO file .//SMA/01.starsolo/SMA__STARtmp/tmp.fifo.read1
SOLUTION: check the if run direc…
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AH super important distinction:
* **RNA-seq reads** are handled well with kallisto
* **scRNA data** is best with scvi-tools, among other things.
*
tools: kallisto is great and I'd love to learn …
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Hello Dr. Yang,
We are running ScanNeo pipeline in which the transIndel command was applied below:
"transIndel_build_RNA.py -r /data/genome/GRCh38/hg38.fa -g /data/genome/GRCh38/gencode3.annotatio…
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### Bug description
If a callout block is the first bit of content for a website post, then the resulting render of that post has skewed positioning, relative to other posts in the website. Here's a …
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Hi,
when I start the expvip-web, it occurs the error:
```
> bioruby-rna-explorer@ start /data2/tools/expvip-web
> npm run watch-js & rails s
Ignoring racc-1.5.2 because its extensions are not b…
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Hi,
I am hoping to perform transcriptome assembly using both nanopore long read sequencing data and illumina short read sequencing data. It appears RATTLE only permits the use of long read sequenci…
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when i install tablemaker can do ./configure but do make have an error:
$ make
make all-recursive
make[1]: Entering directory '/home/yangfang/RNA_seq_work/tools/tablemaker-master/tablemaker-2.1.1'
M…
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Hi,
I was following the tutorial to install Celescope, but I had an issue with the mkref command:
(celescope) root@PT-DR-GHIROLDI:/home/aghiroldi/hs_ensemble_99# celescope rna mkref \
> --geno…