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Hi,
I'm attempting to run a scanpy processed .h5ad file through scvelo but am running into the error pasted below.
I'm relatively new to the whole scene, any help is much appreciated. Let me know if…
PattF updated
4 years ago
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Hi Alex,
I want to test STARsolo for my 10x runs.
I have a question on counting the reads on overlapping features. How STARsolo handle this?
I heard that cellranger discard reads that fall into …
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Hi.. i installed velocyto on HPC cluster and it was fine.. but now when i do
$ velocyto --help
Traceback (most recent call last):
File "/....../anaconda3/envs/my_pymc_env/bin/velocyto", line 7…
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Dear,
I am using scvelo to process my data. I have a mouse single cell dataset (9 samples and 40,000 cells in total), scvelo works well. But, for another mouse single cell dataset (2 samples and 4,00…
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Hello,
First try with this testing release.
I cloned the git repo, and installed with pip install . on python 3.6.5
I loaded an annotated dataframe I am using to work on (created/pp with scanpy),…
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Will using C1 data from SMARTer protocol that has not UMIs incorporated also be possible?
I have run the source code from bam files line by line, setting min.umi.reads=0 but atm my final matrices (em…
mliiv updated
6 years ago