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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1888
KP.3.3.1+G15543T+C21998A(S:H146N)
GISAID query: C21998A, G15543T,C23202A
No. of seqs: 33(USA 2(1 from Turkey) Japan 3(1…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1867
KP.3.1.1+A25121C(S:N1187H)
GISAID query: A25121C, C12616T, A13121T
GISAID query for S:S46L branch: C21699T,C4551T (By @Fe…
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Since SARS-CoV (which caused the [2002–2004 SARS outbreak](https://en.wikipedia.org/wiki/2002%E2%80%932004_SARS_outbreak)) is better studied than SARS-CoV-2 a lot of knowledge can be mapped from there…
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We need to annotate manually-curated molecules with the following information:
- Target: mPro, Spike, ...
- Phenotypic Assay: 0 or 1
- Target Assay: 0 or 1
- Docking: 0 or 1
- IC50: value in uM…
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Hi there,
I created a PanGraph of 200 SARS-CoV-2 sequences using FASTA sequences as input, and it seems that eleven of them aren't represented incorrectly in the JSON file. I have uploaded the data…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1919
KP.3.3+G18274T(Orf1b:A1603S)+del29581(Orf10 frameshift)+T21738C(S:F59S)
GISAID query: G18274T,T21738C,G28884C
No. of se…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1989
KP.3.1.1+C5512T+G23285T(S:A575S)
GISAID query: G23285T,C5512T,C12616T
No. of seqs: 39(Australia 1 Belgium 1 Canada 2(NL…
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transferred from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1653
![image](https://github.com/user-attachments/assets/d2a20d2c-531c-4dc8-bd3b-9df2b31961bc)
tree: https://nextstr…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1840
XDV.1.5+C4683T,T15573C(Orf1a:A1473V)+C3686T, G25793A(Orf1a:H1141Y,Orf3a:R134H)+A8390G, C12854T, T21738C, C25671T(Orf1a:I270…
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I worked a bit on the labelling matching with ENA / NCBI as I had a lot of mismatch issues with the development of the FAIR Data Station. I forked the repo and did an analysis on the terms in MIxS and…