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I want to use sbgn-stylesheet in my react app， but it doesn't work
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Sometimes, the start point and end points of arcs (positions) are not well exported in SBGN-ML.
Attached is an example SBGN-ML file created using newt (start_end_point.txt).
Rendering it using exa…
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In SBGN, 3 different notations are allowed for state variables (cf attached scr…
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SBGN validation for the arcs from SREBP2 returns error. To be re-checked in initial F005-SREBP.graphml file.
Input yEd file:
Output SBGN file (with validation):
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I do not know what is the proper term for those. Normally an arc goes to the centre of the shape - so this is the "landing point". I noticed that if in yEd I modify this "landing point", then in SBGN-…
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The idea is to make the sbgn-converter generate nodes/edges for "empty" and blackbox sub-pathways
(i.e., for those that have no interactions in them originally or as the result of detaching the sub-…
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Should we add the corresponding equivalents for MIM and SBGN as examples?
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Dear SBGN team,
i wanted to use SBGN for the first time and tried to convert my SBML model. However, I encountered several pitfalls that made it impossible for me:
1. The link for the only convert…
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Is there any way to mark text as safe (in labels). I have labels with already replaced text, and when saving the xml, the &'s are again replaced as `&` for example
`β` is changed to `&…
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Model exported as sbgn from newt [here: coords-check.sbgn.zip](https://github.com/iVis-at-Bilkent/newt/files/8449891/coords-check.sbgn.zip)
I would like to ask how do you draw the end of a reaction…