sbgn libsbgn issues - Githubissues

sbgn / libsbgn

Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++

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Improve Usability with SBML models

#65 shoepfl opened 1 year ago
4
Bump xalan from 2.7.0 to 2.7.2

#64 dependabot[bot] closed 1 year ago
0
Bump xercesImpl from 2.11.0 to 2.12.2

#63 dependabot[bot] closed 1 year ago
0
Use `emptyset` rather than `source and sink`

#62 fbergmann opened 3 years ago
0
Bump junit from 4.12 to 4.13.1

#61 dependabot[bot] closed 1 year ago
0
Bump xercesImpl from 2.11.0 to 2.12.0

#60 dependabot[bot] closed 2 years ago
1
Encoding issue

#59 piotr-gawron closed 4 years ago
4
Saxon upgrade

#58 piotr-gawron closed 4 years ago
5
Conflicting library version in maven dependency.

#57 piotr-gawron opened 4 years ago
0
Switch to Github Packages

#56 cannin opened 4 years ago
0
Extension: added new Equivalence operator from PD L1V2.0 spec

#55 tczauderna closed 4 years ago
2
Incorrect SBGN file format following writing the render information

#54 ibalaur opened 5 years ago
5
Problems writing render extension, set DocumentBuilderFactory in SbgnUtil.addAnnotation namespace aware?

#53 tczauderna opened 5 years ago
2
Suggestion: Font style property to be exposed via the RenderUtil class

#52 ibalaur closed 5 years ago
3
Question on high level validation, ruleId=pd10112: if there are compartments defined, top-level glyphs must have a compartmentRef.

#51 ibalaur opened 5 years ago
2
Suggestion: function to convert from 3.0 to 2.0 to be provided

#50 ibalaur opened 5 years ago
0
SbgnUtil.readFrom(InputStream is) fails when conversion from Milestone 1 or 2 necessary

#49 tczauderna opened 5 years ago
2
Added exception handling when getting JAXB context

#48 tczauderna closed 5 years ago
0
Proposal to allow double colon (i.e. "::") to be used inside a glyph id

#47 ibalaur closed 5 years ago
4
maven build not working on some systems

#46 fbergmann opened 5 years ago
1
port ant script to maven

#45 fbergmann closed 5 years ago
3
utility classes for creating / accessing render elements

#44 fbergmann opened 5 years ago
0
clone / notes examples

#43 fbergmann opened 5 years ago
0
Schema not found

#42 yun-vis opened 5 years ago
1
Compile problem: error: Source option 1.5 is no longer supported. Use 1.6 or later

#41 ibalaur closed 5 years ago
1
Update annotation.sbgn

#40 haleyyew closed 5 years ago
2
More flexible parse functions with support for InputStreams

#39 draeger closed 5 years ago
1
Ant tests failing

#38 matthiaskoenig closed 5 years ago
3
Specification documentation & javadocs for v0.3

#37 matthiaskoenig closed 7 years ago
0
Updated documentation & build instructions

#36 matthiaskoenig closed 7 years ago
0
v0.3-SNAPSHOT

#35 matthiaskoenig closed 4 years ago
3
Create specification docs for v0.3-SNAPSHOT

#34 matthiaskoenig closed 7 years ago
1
Create javadocs for v0.2 and v0.3-SNAPSHOT & host somewhere

#33 matthiaskoenig closed 7 years ago
1
Develop

#32 matthiaskoenig closed 7 years ago
0
Add license

#31 matthiaskoenig closed 7 years ago
2
Serializations not created in C++ bindings

#30 cannin closed 8 years ago
5
phenotype / observable class for ER maps

#29 cannin closed 8 years ago
1
Custom Annotations warrant higher priority

#28 cannin closed 8 years ago
1
drawing order of overlapping compartments in PD

#27 cannin closed 8 years ago
6
enum with string constants

#26 cannin closed 8 years ago
2
ids on arcs?

#25 cannin closed 8 years ago
6
STAT1 alpha get's converted to STAT1α

#24 cannin closed 8 years ago
6
Compartment containment

#23 cannin closed 8 years ago
2
Unit of information label = prefix + value

#22 cannin opened 13 years ago
2
Proposal for text styles

#21 cannin opened 13 years ago
2
definition of starting point / end point for arcs

#20 cannin closed 8 years ago
3
mismatch betw. def. of bounding box in schema and test files

#19 cannin closed 8 years ago
3
Recommend a mime type

#18 cannin opened 13 years ago
1
Complex Glyphs depicting elements on the inside

#17 cannin closed 8 years ago
3
Bug in compartments.xml or how to do associations

#16 cannin closed 8 years ago
5