-
Dear nicheNetR Team,
Following my nichnetr analysis, I have generated a list of target genes and I am interested in assigning pathways to these genes. Could you kindly advise if there is a function…
-
Dear Professors,
Thanks for coming up with this great tool. However, I'm confused with how to use it by the tutorial. In PDAC deconvolution, the tutorial only uses the train_vae function, however,…
-
I'm bulk RNA-seq data and sc-RNA data with Ensembl Ids. And using cell type Fibroblasts.
```
> dim(bk.dat)
[1] 546 19988
> dim(sc.dat)
[1] 1159 19828
> sort(table(cell.type.labels))
…
-
There will be certainly be interest in creating additional models -- e.g. with fewer segments to accommodate larger inserts or other schemes of information embedded in each segment. A tutorial on how…
-
hello,everyone, I run my code as follow:
library(MuSiC2)
library(MuSiC)
library(bseqsc)
setwd("D:/cibersortx/Music/music2")
## Bulk RNA-seq data
benchmark.eset = readRDS("bulk-eset.rds")
benchm…
-
I am trying to use GSE124872 to annotate bulk RNA seq data but I'm having trouble creating an expression set from both of them. For GSE124872, there is no actually cell type in the metadata that is co…
-
I have curated multi-gene displays for all datasets in the following profiles (very few have issues and I am keeping track of them and will create tickets later):
- Adult
- Aging
- Central auditory…
-
I am trying to re-process the [data from Grun et al 2016](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2142263) (a CEL-Seq paper), and I am getting very low counts from kallisto and bustools,…
-
@adkinsrs When doing a gene search with single gene view, there is a message "There was an error drawing the plot." for P1, P12, P100, mouse, scRNA-seq, utricular hair cells (Kelley). Vestibular profi…
-
Hi,
I'm learning how to use MuSiC2. When I'm running the sample code in tutorial, an error happened to me. So, how to deal it.
///
> # music2 deconvolution
> set.seed(1234)
> est.prop = MuSiC2:…