-
Hi
i want to analyze some scATAC-seq data. And after unzip, i got 10 folders (1 patient per folder). In folder, there are 2 subfolders in whcih scRNAseq data and scATAC-seq data exist seperately. W…
-
Hi
i want to analyze some scATAC-seq data. And after unzip, i got 10 folders (1 patient per folder). In folder, there are 2 subfolders in whcih scRNAseq data and scATAC-seq data exist seperately. W…
-
Hello, thank you for developing MAESTRO!
I am someone that is fairly new to ATAC-seq analysis. I am trying to use MAESTRO for 10X scATAC-seq using the latest version and MAESTRO has its own conda e…
-
@adkinsrs @jkanche I am using P2, mouse, scATAC-seq, Chromatin Accessibility (Waldhaus) as an example but it was the same with the 2 Segil datasets.
I enter atoh1 pou4f3 sox2 in the search box of t…
-
I frequently work with single-cell multi-omics data (mostly scRNA-seq + CITE-seq, but scATAC-seq is also expected), and it is known that different modalities for the same samples requires separate seq…
-
Relative to https://github.com/mc2-center/data-models/issues/49 and https://github.com/mc2-center/data-models/pull/66
Draft of the MC2 data model dictionary, using GitHub pages deployment, is here:…
-
- [ ] scRNA-seq
- https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_mr#runmkref
- [ ] What about scATAC-seq
-
Hi!
I was following the tutorial for integrating scRNA-seq data and scATAC-seq data using the dataset provided. However, I get the following error when I run the step: atac = tfl.findNeighbors(adat…
-
**Describe the bug**
The DAG is incorrect for workflow github.com/hubmapconsortium/sc-atac-seq-pipeline/HuBMAP_scATAC-seq_Pipeline:feature/remove-curly-braces
after fixing https://github.com/dockstor…
-
This is a question about the .table file. I understand that LIGER integrates the scATAC and scRNA-seq. What exactly does this .table contain, and how can I generate it from other pipelines (Seruat, sc…