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I tried to train a scRNA-seq data set with celltype category intersection between multiple data sets. I would like to ask if there are some data sets with a small amount of data that are recommended?
fscdc updated
3 months ago
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Hi,
When I run DNBC4tools via singularity, I got an error like this:
```
The chemistry(darkreaction) automatically determined in cDNA : darkreaction
The chemistry(darkreaction) automatically d…
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Hello, very great method! But I have normal and treated mouse hypothalamus scRNA-seq data and I wonder could I use this method on my data? Also, could sex bias affect the inference results? I mean, c…
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Hello. Thank you for this package. I'm doing an integration analysis using more than 40 scATAC samples. However, I do not have scRNA data from the same cells. I tried doing the label transfer using th…
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Hi guys,
The reference human PBMC data shows "403 ERROR" when I was trying to download it while running Seurat V5 Vignette "Dictionary Learning for cross-modality integration." I can neither downlo…
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Dear Saeyslab team,
Thank you for creating the great package!
I have been following the vignettes for analysis of scRNA-seq data of mouse embryonic tissues. I am mostly interested in differenti…
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Hi.
In your publication :"Analysis of Alzheimer’s disease scRNA-seq data. The MARS-seq scRNA-seq raw data were download from GSE9896971. The raw fastq file were modified using custom scripts to embed t…
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When I ran scMetabolism to quantify metabolic activity ,I met some problem:
library(Seurat)
library(scMetabolism)
scRNA dense coercion: allocating vector of size 5.9 GiB
Is there anyone encounter …
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The current directory structure for the scRNA module set looks something like this:
```
training-modules/scRNA-seq$ tree
.
├── 00-scRNA-seq_introduction.md
├── 01-normalizing_scRNA-seq.Rmd
├── 0…
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I am unable to install cellphonedb using the instructions on github and wanted to upload my data to your server for analysis. Could you please let me know when this will be available? Currently, I am…