-
See here: https://github.com/ray-project/ray/issues/40211
Last I saw, there were no updates as to timeframe for making ray compatible with Python 3.12 and above, nor a description of what the issue…
-
It would be nice to have the option of filtering read alignments by percent similarity, and potentially even reporting summary values if a user desired. For example, a separate output table with the m…
-
### Microsoft PowerToys version
0.82.1
### Installation method
WinGet
### Running as admin
Yes
### Area(s) with issue?
Keyboard Manager
### Steps to reproduce
When I remove …
-
https://github.com/ArrowLuo/CLIP4Clip/blob/508ffa3de39ba0563a03199c440ab602a72e9b6f/modules/modeling.py#L400
```
if self.training:
visual_output = allgather(visual_output, sel…
-
Hello Jaebom,
I am running into a strange problem using the Refseq Prokaryote/Viral DB to try and classify paired-end short reads. As the run goes on, it just keeps increasing the --match-per-kmer …
-
####
**Lab Name**: Bioinformatics and Data Science in Biotechnology Lab
**Department**: Biotechnology and Biomedical Engineering
**List of Experiments and Repositories**:
1: Writing and…
-
for sequences with lengths over 64 characters it would still be possible to calculate the similarity for multiple sequences in parallel using simd. However for very long sequences it might be faster t…
-
I'm kind of struggeling with calculating correct item-item-similarities with the sequence model.
What I try to do is the following: I fit the sequence model, then take the item_embeddings and run ann…
-
Hi Sigalign team,
Thanks for the amazing library for sequence alignment. I have a question related to aligning high similar sequences against a reference. If the read is always > some certain thre…
-
I am trying to run a `foldseek easy-search` job with the UniProt database built from `foldseek databases Alphafold/UniProt`. With two different attempts on different machines (with up to 256GB memory)…