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Hi,
I am working with MCP- counter for my project and it is providing me with scores for both Monocyte and Monocyte/Macrophages. The scores for both are exactly the same, I looked into the signatur…
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hi developer, thank you so much for your helpful tools.
I tried to use irGSEA to calculate the GO -BP geneset enrichment scores. But when I calculated the enrichment score as shown below:
`skin.GO.B…
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Hello,
We are trying to use MCP counter on mouse bulk RNA seq data.
First we tried mMCPcounter, however we encountered issues with their given signature.
So, next, we tried MCPcounter. We ha…
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After running the function runGenePeakcorr I get this error message:
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘letterFrequency’ for signature…
fh34 updated
10 months ago
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Hello,
Just a note that the `deconvolute` function for MCPCOUNTER returns an error in cases where there is no internet access (eg, some institutional setups for compute nodes). This is because …
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
JuHey updated
6 months ago
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Hi,
I am using a little selection of immunegenes from a panel of oncogenes from HTG experiment
and I have totally 1402 genes.
Can I run XCell following any instructions? My error is;
scores = ra…
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There have been talks of having a page to help users derive cell types from an unannotated dataset.
From what I understand (and there are probably some blank gaps),
1. User selects dataset with …
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Created an initial guess as follows:
`chromosome = [SAGA_optimize.ElementDescription(low=0, high=1, mutate="mutateRandomRangedInteger") for _ in genes]`
Then created a SAGA instance per the tuto…
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Hi, I'm interested in using UCell to try and view changes in a geneset of interest between two conditions in a Seurat dataset. However, the dataset in particular was sequenced a little late, so some o…