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To perform thermodynamic integration between the classical and quantum partition functions, mulitple path integral molecular dynamics simulations should be performed for which the masses of the atoms …
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We'd like to know how big of a rescaling factor do we need to run simulations of Drosophila (under the [Sheehan & Song demographic model](https://stdpopsim.readthedocs.io/en/latest/catalog.html#sec_ca…
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The web interface of Webots needs to load 3D world files and textures to display the 3D scene.
Depending on the complexity of the world, number and size of textures, network bandwidth, local machine …
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I think it would be very useful to have a `trigger_callback` option as well as a `trigger_abort` option when defining an alert. The main reason for this is that the abort kills the entire script, not …
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Discovered 7/29/2024 by Debbie, Laura, Jenn and Matthew in PROD instance.
- Debbie, Laura, Jenn and Matthew all tried to run simulations at the same time.
- This resulted in the Sim UI entering an…
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When running full tests this week, I noticed that virtually no lift was being generated by the wing. When I went and zoomed into the simulator, the wings were vibrating at high frequency, probably the…
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i have carried out the MC simulations at temperature of 5 K, i am getting the results.json file as:
```
{
"" : [ 0.371831216496, 0.500000000000, 0.500000000000, 0.500000000000, 0.575350322421,…
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Profiling the [test_inversion](https://github.com/hyanwong/GeneticInheritanceGraphLibrary/blob/0595ded56a0fb70d2b18fbeeec13bd6f9cf49d6c/tests/test_gigutil.py#L198) code with the cProfiler gives this a…
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I ran the "pyridineDensOverlap" example with the GPU and CPU versions (https://github.com/Probe-Particle/ppafm/tree/main/examples/pyridineDensOverlap). Using the same input files and comparing the res…
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Full reprex to be attached momentarily (comment too large for pasting), bug found in course of identifying problem in #130
Note for #130 will not fix, however, logging here for addressing software…