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I'm trying to create a function that extracts the necessary information directly from adata files
```
def annData_converter(
sc_adata, st_adata, sc_annotation="ann_level_3_transferred_label…
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### Project short name:
MerfishCorticalLayer
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files:
* Google Drive:
* Publication: [Spatial Single-cell Analysis Decodes Cortical L…
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Hi Sam,
I have a dataset where the cells are of the same type but belong to different conditions and different samples. Is it necessary to create meta cells in this case? Can I skip this step and …
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We have recently acquired some of the single-cell kits from Singleron in the USA and are now ready for the data analysis.
I have to say that I do not remember ever seeing software from a commercial…
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i have many question about your readme:
in your results: "normalized_matrix: The final AS probability matrix, the rows correspond to sites, while the columns represent cells." columns represent cel…
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Hello!
it would be great if a tutorial could be created for performing cell type specific analysis, where analysis uses as input a) your own single-cell data b) downloaded GWAS summary statistics.
…
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**Submitting author:** @Qile0317 (Qile Yang)
**Repository:** https://github.com/Qile0317/APackOfTheClones
**Branch with paper.md** (empty if default branch): joss
**Version:** 1.2.0
**Editor:** @skanw…
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Hello!
When I was using scTE, I encountered some problems and I wonder if I can get some advice.
### Question 1: Preprocessing BAM Files with Filtered Barcodes from CellRanger Output
I'm ex…
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Hi,
First, congratulation on this beautiful work, and thanks for sharing this repo along the manuscript. I found the discussion and results in the manuscript on ML approach vs standard DEG analysis…