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https://doi.org/10.1101/gr.110882.110
# Authors
Saiful Islam, Una Kjällquist, Annalena Moliner, Pawel Zajac, Jian-Bing Fan, Peter Lönnerberg, and Sten Linnarsson
# Year
2011
# Abstract
…
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### Is your feature related to a problem?
In one of my samples, wf-single-cell fails to correctly find the cutoff in the knee plot and returns an excessive large number of cells. Consequently, when l…
ddiez updated
4 weeks ago
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Following #758, we should go through all materials here and in the exercises to make sure that all of the results are still as expected and build without errors.
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1. A comparison of automatic **cell identification** methods for single-cell RNA sequencing data
Article Link: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1795-z
2. Challen…
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Dear respected author,
Hello! I am thrilled and deeply inspired after reading your work, as I am currently seeking methods to distinguish diploid and tetraploid cells in plant scRNA-seq data. I w…
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Hello,
Thank you for developing ENVI, I think it's a really promising tool!
Nevertheless, I have tried out the first version of ENVI with Tensorflow, and the UMAP in the latent space looked quit…
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https://doi.org/10.1101/199315
>Single cell RNA sequencing (scRNA-seq) is a powerful technique to analyze the transcriptomic heterogeneities in single cell level. It is an important step for studyi…
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Benchmarks to perform
- [x] RNA-Seq
- [ ] Variant calling
- [ ] Single cell
- [ ] High profile tools
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https://github.com/drisso/bioc2019singlecell
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Hi team,
Thank you very much for developing this amazing tool! Do you think Velocyto is suitable for analyzing single nucleus RNA-seq dataset as well? The reason why I ask this is because single nucl…