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I need to execute some machine learning algorithms on a remote GPU server. It is likely that some heavy training is going and all CPU and GPU resources are occupied. In this case, starting a remote pr…
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Hi, I would like to analyze my shallow shotgun metagenomics data according to the OGU method, https://journals.asm.org/doi/10.1128/msystems.00167-22
The recommended aligner is Shogun, especially I as…
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Hello, when estimating with GPZ, if some magnitude error columns contain NaN, estimation stops with a `ValueError` exception.
Note: tried with `nondetect_val=np.nan` and without setting `nondetect_…
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### Name and Institution (Required)
Name: Tessa Clarizio
Institution: UIUC
### Confirm you have reviewed the following documentation
- [y ] [Support guidelines](https://gchp.readthedocs.io/e…
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Hi,
I did some tests with the latest stat-cl.
It works file on runs with 45 nodes x 16 MPI
but it fails with the error from bellow on a run with 880 nodes x 8 MPI
```
[atosla@ac1-1001 ~]$ …
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Hi there!
This is a follow up on https://github.com/gbradburd/conStruct/issues/36 and on https://github.com/gbradburd/conStruct/issues/40. I can use https://github.com/kdm9's extra parallelized cod…
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Hello, in input files without the redshift column, executing the redshift estimation doesn't work:
```
Traceback (most recent call last):
File "/lustre/t1/cl/lsst/tmp/henrique.almeida/slurm-hom…
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Dear Developers,
After running my 20 genomes with the Markers Discovery pipeline around a 100 times (trying different parameters combos), I always ended with the same result: "No markers identified…
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In our national HPC centre in Perth, Australia, we've been using Singularity for over 3 years now.
So far we've been performing the configuration for MPI high-speed interconnect manually (libraries…
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Hello, when running an estimation with a file using different column names for the magnitudes, I get the following error:
```
Process 0 running estimator on chunk 0 - 1561
Traceback (most recent …