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knights-lab
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SHOGUN
SHallow shOtGUN profiler
GNU Affero General Public License v3.0
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Access to prebuild databases
#46
Ales-ibt
closed
1 month ago
9
Shogun function by using kraken & Bracken output
#45
luzhang321
opened
5 months ago
4
shogun filter - incompatible DB error
#44
mkariush
opened
1 year ago
0
Issues with -a option, shogun pipeline command
#43
rahel31
opened
1 year ago
2
SHOGUN fails silently when bowtie2 runs out of memory
#42
ElDeveloper
opened
2 years ago
1
Test failed after installing with conda
#41
ShixiangWang
closed
2 years ago
1
Additional documents request
#40
Justice-Lu
opened
3 years ago
1
Additional functional databases
#39
prmac
opened
3 years ago
1
CUDA incompatibility error
#38
idoerg
opened
3 years ago
1
LCA String
#37
bhillmann
opened
4 years ago
0
Fixed a bug in lowest common ancestor.
#36
bhillmann
closed
4 years ago
0
Release v1.0.8
#35
bhillmann
closed
4 years ago
0
Bmh assign taxonomy mem
#34
bhillmann
closed
4 years ago
0
Develop
#33
bhillmann
closed
4 years ago
0
Kegg rare removal cut-off
#32
lonsdzoe
closed
1 year ago
0
simplify pre-built database download instructions
#31
gregcaporaso
closed
4 years ago
0
LCA bugfixes
#30
bhillmann
closed
4 years ago
1
Release v1.0.7
#29
bhillmann
closed
4 years ago
0
improve LCA function
#28
qiyunzhu
closed
4 years ago
6
Running SHOGUN according to documentation fails with large datasets
#27
SJohnsonMayo
opened
4 years ago
2
Mac installation
#26
I-Shatha
opened
4 years ago
0
shogun functional fails to run with no output error
#25
aemmons90
opened
4 years ago
0
Add a mention of the algorithm used for redistribution
#24
wasade
opened
5 years ago
0
SHOGUN creates empty files
#23
padbc
opened
5 years ago
6
combined seqs
#22
waleadebayo
opened
5 years ago
4
explicitly name assign_taxonomy to avoid click issues
#21
nbokulich
closed
5 years ago
0
Taxonomy for Database
#20
dcdanko
opened
5 years ago
3
Testing conda installation
#19
gputzel
opened
6 years ago
8
SHOGUN silently produces empty output alignment when BURST segfaults
#18
tanaes
opened
6 years ago
19
Question: levels on functional profiling?
#17
tanaes
closed
6 years ago
2
Allow shogun to output relative abundance
#16
bhillmann
closed
6 years ago
0
Add the ability to summarize KEGG tables
#15
bhillmann
closed
6 years ago
1
Contaminate filtering takes forever
#14
bhillmann
closed
6 years ago
1
More descriptions in help strings
#13
danknights
closed
6 years ago
1
Use --taxacut 5
#12
danknights
closed
6 years ago
1
Output separate normalized strain table
#11
danknights
closed
6 years ago
1
Add installation instructions for databases
#10
danknights
opened
6 years ago
3
Rename Embalmer to BURST
#9
danknights
closed
6 years ago
1
20170210 confidence thresholds
#8
danknights
closed
7 years ago
0
An example feature
#7
bhillmann
closed
7 years ago
0
Starting the first release branch
#6
bhillmann
closed
6 years ago
0
More comprehensive instructions on usage
#5
danknights
opened
7 years ago
3
last_common_ancestor.py import module find_betweens error
#4
qiyunzhu
closed
6 years ago
12
Error Running UTREE with SHOGUN-BUGBASE
#3
cmstaley
closed
7 years ago
7
GreenGenes OTU table as output
#2
TonyaWard
closed
6 years ago
1
Fix to automatically build pickle files
#1
bhillmann
closed
8 years ago
1