knights-lab SHOGUN issues

knights-lab / SHOGUN

SHallow shOtGUN profiler

GNU Affero General Public License v3.0

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issues

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Access to prebuild databases

#46 Ales-ibt closed 5 months ago
9
Shogun function by using kraken & Bracken output

#45 luzhang321 opened 9 months ago
4
shogun filter - incompatible DB error

#44 mkariush opened 1 year ago
0
Issues with -a option, shogun pipeline command

#43 rahel31 opened 2 years ago
2
SHOGUN fails silently when bowtie2 runs out of memory

#42 ElDeveloper opened 2 years ago
1
Test failed after installing with conda

#41 ShixiangWang closed 2 years ago
1
Additional documents request

#40 Justice-Lu opened 3 years ago
1
Additional functional databases

#39 prmac opened 4 years ago
1
CUDA incompatibility error

#38 idoerg opened 4 years ago
1
LCA String

#37 bhillmann opened 4 years ago
0
Fixed a bug in lowest common ancestor.

#36 bhillmann closed 4 years ago
0
Release v1.0.8

#35 bhillmann closed 4 years ago
0
Bmh assign taxonomy mem

#34 bhillmann closed 4 years ago
0
Develop

#33 bhillmann closed 4 years ago
0
Kegg rare removal cut-off

#32 lonsdzoe closed 2 years ago
0
simplify pre-built database download instructions

#31 gregcaporaso closed 4 years ago
0
LCA bugfixes

#30 bhillmann closed 4 years ago
1
Release v1.0.7

#29 bhillmann closed 4 years ago
0
improve LCA function

#28 qiyunzhu closed 4 years ago
6
Running SHOGUN according to documentation fails with large datasets

#27 SJohnsonMayo opened 5 years ago
2
Mac installation

#26 I-Shatha opened 5 years ago
0
shogun functional fails to run with no output error

#25 aemmons90 opened 5 years ago
0
Add a mention of the algorithm used for redistribution

#24 wasade opened 5 years ago
0
SHOGUN creates empty files

#23 padbc opened 5 years ago
6
combined seqs

#22 waleadebayo opened 5 years ago
4
explicitly name assign_taxonomy to avoid click issues

#21 nbokulich closed 5 years ago
0
Taxonomy for Database

#20 dcdanko opened 6 years ago
3
Testing conda installation

#19 gputzel opened 6 years ago
8
SHOGUN silently produces empty output alignment when BURST segfaults

#18 tanaes opened 6 years ago
19
Question: levels on functional profiling?

#17 tanaes closed 6 years ago
2
Allow shogun to output relative abundance

#16 bhillmann closed 6 years ago
0
Add the ability to summarize KEGG tables

#15 bhillmann closed 7 years ago
1
Contaminate filtering takes forever

#14 bhillmann closed 7 years ago
1
More descriptions in help strings

#13 danknights closed 7 years ago
1
Use --taxacut 5

#12 danknights closed 7 years ago
1
Output separate normalized strain table

#11 danknights closed 7 years ago
1
Add installation instructions for databases

#10 danknights opened 7 years ago
3
Rename Embalmer to BURST

#9 danknights closed 7 years ago
1
20170210 confidence thresholds

#8 danknights closed 7 years ago
0
An example feature

#7 bhillmann closed 7 years ago
0
Starting the first release branch

#6 bhillmann closed 7 years ago
0
More comprehensive instructions on usage

#5 danknights opened 7 years ago
3
last_common_ancestor.py import module find_betweens error

#4 qiyunzhu closed 7 years ago
12
Error Running UTREE with SHOGUN-BUGBASE

#3 cmstaley closed 7 years ago
7
GreenGenes OTU table as output

#2 TonyaWard closed 7 years ago
1
Fix to automatically build pickle files

#1 bhillmann closed 8 years ago
1