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### Checklist
- [X] I am using the current [`master`](https://github.com/PyPSA/pypsa-usa/tree/master) branch
- [X] I am running on an up-to-date [`pypsa-usa` environment](https://github.com/PyPSA/pyp…
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**Is your feature request related to a problem? Please describe.**
When running sopa using snakemake, everything runs fine until some Baysor patches fail due to `not enough cells pass prior min_mol_p…
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I am using the latest versions of snakemake (8.25) and am trying to use the executor plugin (0.11.1) for slurm for my pipeline.
However, when I use the command-line to run snakemake with the …
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See examples in `https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#standard-resources`
* `mem`, `mem_mb`, `mem_mib`, ...
* `disk`, `disk_mb`, `disk_mib`, ...
* tmp_dir
* runtime
…
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Greetings,
Thanks for this amazing tool.
Just wondering if you know what's happening here? This happens after running for sometime like maybe an hour and sometimes I have to run it again and agai…
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Hello,
I recently updated my version of Snakemake to version 8, and now Verkko doesn't work. Specifically, I get the following error:
```
snakemake: error: unrecognized arguments: --reason
```
…
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There is a rule `download` which downloads a FASTQ. The output of that rule is marked `temp()`. Then, there are three rules which can run in parallel, which all use this FASTQ. After those rules finis…
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**Is your feature request related to a problem? Please describe.**
On our cluster, certain libraries are pre-installed and can be loaded via `module load` while python environments are managed via co…
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**Current version in GwasQcPipeline**
```
$ snakemake --version
6.15.5
```
**Latest version**: [v8.20.5](https://github.com/snakemake/snakemake/releases/tag/v8.20.5)
## Migration…
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Hi , I am getting the following error. I was attempting to use a different GWAS sumstat with the test target data and it keeps getting stuck on this error.
Error in rule prep_pgs_lassosum_i:
…