JetBrains-Research snakecharm issues

JetBrains-Research / snakecharm

Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.

MIT License

61 stars 7 forks source link

issues

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Inconvenient indent after typing '\n' symbol in a single line sections in the end of file

#558 iromeo opened 2 weeks ago
1
Wildcard not properly defined false warning when typing first input, then output section

#557 iromeo closed 2 weeks ago
0
Code completion for standard resources keys (mem_mb, etc.) + resource_scopes

#556 iromeo opened 1 month ago
2
Support for Global workflow dependencies [8.0.0] syntax

#555 iromeo closed 1 month ago
1
Support for `storage` directive

#554 iromeo closed 1 month ago
2
Inject some modules in Snakefile file resolve scope w/o import declaration, e.g. os, sys,..

#553 iromeo closed 1 month ago
0
Unresolved `output` in rule imported from module

#552 iromeo closed 1 month ago
1
Support for `scattergather` directive

#551 iromeo opened 1 month ago
1
Inspection False Positive: Unresolved reference: 'storage', 'github', 'gitfile', 'gitlab'

#550 iromeo closed 1 month ago
1
Inspection False Positive: Unresolved reference 'log'

#549 iromeo opened 1 month ago
1
[8.3.0] Inspeciton False Positive: Unresolved reference for: lookup, evaluate, branch, collect, exists

#548 iromeo closed 1 month ago
3
Parsing error in : input: '{ds}.bam'.format(ds=ds) for ds in DATASETS

#547 iromeo opened 1 month ago
1
Inspection False Positive: Unresolved reference 'snakemake'

#546 iromeo closed 1 month ago
1
Allow access to module name obj through local variable:

#545 iromeo opened 1 month ago
0
Fix token debug name in PyUnresolvedReferencesInspection warning: Cannot find reference 'input' in 'Py:USE_KEYWORD mod1_*'

#544 iromeo opened 1 month ago
1
Inspection False Positive: Rule or Checkpoint name 'check1' has not been defined yet

#543 iromeo opened 1 month ago
0
Inspection Error False Positive: Unresolved reference for `version` local function

#542 iromeo opened 1 month ago
1
Inspection Error False Positive: Unresolved output for output local var

#541 iromeo opened 1 month ago
0
Inspection error false positive: This rule name is already used by another rule declaration.

#540 iromeo opened 1 month ago
0
Undeclared section threads warning should not be shown here

#539 iromeo closed 1 month ago
1
Inspections: Warn if snakemake expects sections args to be on next line for multi line arguments

#538 iromeo opened 1 month ago
0
Revise snakemake.io flags in 8.0

#537 iromeo closed 1 month ago
1
Improve API in `snakemake_api.yaml` to remove some keywords behaviour hardcoded in the plugin

#536 iromeo closed 1 month ago
1
For section keywords show 'since' version and deprecation notice in completion list. Do not suggest already removed keywords.

#535 iromeo closed 1 month ago
1
SlowOperations workaround in SmkFrameworkSettingsPanel

#534 iromeo opened 1 month ago
0
SlowOperations workaround in ImplicitPySymbolsProvider

#533 iromeo opened 1 month ago
0
SnakeCharm not compatible with PyCharm version 2024.2

#532 LottePronk closed 1 month ago
5
Features/#500 add version warning

#531 Xewar313 closed 1 month ago
1
Features/#527 last line comment error

#530 Xewar313 closed 1 month ago
0
Features/#508 deprecation inspection

#529 Xewar313 closed 1 month ago
0
Improve target rules support

#528 Xewar313 opened 6 months ago
0
Snakecharm marks error on comment in last line

#527 Xewar313 closed 1 month ago
1
Multiple functions are not recognized by snakecharm

#526 Xewar313 closed 1 month ago
1
Inspection: Cache and bechmark are not reported as an error

#525 Xewar313 opened 6 months ago
3
Snakecharm does not recognize localrule directive

#524 Xewar313 closed 1 month ago
2
Gitfile command is not recognized by snakecharm

#523 Xewar313 closed 4 weeks ago
2
Importing rules using github function does not work

#522 Xewar313 closed 1 month ago
2
After using import, fuctions from other smk files are not detected

#521 Xewar313 opened 7 months ago
2
Section names cannot be resolved for rules after inheritance using use

#520 Xewar313 opened 7 months ago
0
Features/#515 improve rule declaration message

#519 Xewar313 closed 7 months ago
1
Fix/#515 improve rule declaration message

#518 Xewar313 closed 7 months ago
0
Completion for wrapper names rarely works

#517 iromeo closed 7 months ago
0
Fix/don't mention identifier when it was already defined

#516 Xewar313 closed 7 months ago
1
Improve parser error message when rule/module is declared with name but lacks ':'

#515 Xewar313 closed 7 months ago
0
Features/#513 pc 2024.1

#514 iromeo closed 7 months ago
0
PyCharm 2024.1 support

#513 iromeo closed 7 months ago
5
Wildcard not defined in output of Target Rule

#512 JoshLoecker opened 9 months ago
3
Unresolved reference 'snakemake'

#511 iquasere closed 1 month ago
5
[7.11] Resources scopes support

#510 iromeo closed 1 month ago
2
Unresolved reference warning when iterating over 'input' key-value pairs using '.items()'

#509 BertBog opened 1 year ago
0