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The following command returns and error:
```
sourmash scripts randsampling -k 21 --sig ERR11520689.k21.sig.zip --max-kmers 1000 --plot -o sub/test.subsample.sig.zip
```
The error:
```
== This …
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I was testing fastgather with some fecal microbiome sample, and noticed that while fastgather does use much less memory compared to sourmash gather, it actually takes much longer to finish. When using…
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This example uses the metagenome signature prepared in https://github.com/sourmash-bio/sourmash-examples/issues/12.
You'll also need to download the GTDB database as in https://github.com/sourm…
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**Note: not yet final**
v0.2: https://github.com/AllTheBacteria/AllTheBacteria/releases/tag/v0.2
sourmash databases constructed by @ccbaumler 🎉
* [allthebacteria-v0.2-k21.zip](https://farm.cs…
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# Hung up process
I am currently working on completing the GTDB and GenBank updates. This requires ~200,000 and ~1,000,000 sequences to be gathered and sketched. Typically, there has been no issue …
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When sketching sequences with `N` in them and using the `--check-sequence` option I get the following exception:
```
sourmash.exceptions.Panic: sourmash panicked: \
thread 'unnamed' panicked with…
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While I'm not doing a lot of `sourmash compare` (see https://github.com/nf-core/kmermaid/issues/75) I may still want to make an SBT index.
Reasons:
- SBT indices are easy to add a single new sampl…
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the betterplot plugin (#3178 and https://github.com/sourmash-bio/sourmash_plugin_betterplot/) provides some nice additional visualization capabilities to sourmash, and several of the commands work dir…
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thanks to @luizirber's nixos setup, we're already logging with `caddy`
log files on the `mastiff` server: `wc -l /var/log/caddy/access-*`
```
3868 /var/log/caddy/access-branchwater.sourmash.b…
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on farm at `/home/ctbrown/scratch/2022-branchwater-benchmarking/wort-list-d.d/Snakefile` -
```python
# convert a bunch of .sig files into .sig.zip files and also produce .mf.csv fil
es.
FILELI…