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I am testing out the 1F slice-PASEF method from your preprint and have the following questions...
1. I am wondering what the best practices are to run this in the DIA-NN software in terms of param…
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Dear Vadim,
thank you for your work on DIANN and its new release.
I was wondering if the MS spectra in silico prediction is unchanged with respect to the previous version (if I understood correct…
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Hi Vadim,
I am searching diaPASEF data for quantification against a sample specific spectral library. The spectral library contains 11973 protein groups and I am identifying 10606 of these protein …
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My computer (AMD Threadripper, 24 cores, 48 threads, 256 Gb RAM) freezes after starting DIA-NN 1.9 spectral library prediction. It does not respond to anything and requires a force shutdown (unpluggin…
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## Summary
Create a tool that converts the current .clustering results into commonly used file formats
## File Formats
* MSP
* MGF
* mzML
## Filter options
* minimum cluster s…
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# Abstract
Methods to represent multiple spectra
Spectral library searching offers a sensitive yet fast method to match spectra from mass spectrometry-based proteomics experiments. The techn…
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Hi,
Can can I pull out m/z, retention time, charge, ion mobility and protein accession/name from a spectral phospho library created from the reviewed human uniprot database.
Best Kieran
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Hi Vadim,
Thanks for providing the exceptional software for the community.
I have a question about whether DIA-NN can detect proteins/peptides containing non-standard amino acids? If yes, what …
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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**Describe the bug**
When validating an example with `oneOf` schema, an `oas3-valid-media-example`error is reported even if correct
**To Reproduce**
1. Given this OpenAPI/AsyncAPI document …