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(funannotate) wangyuanbing@wangyb-System:~/Desktop/CZY/funannotate$ python -m pip install git+https://github.com/nextgenusfs/funannotate.git
Looking in indexes: https://pypi.tuna.tsinghua.edu.cn/simp…
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I have prepared a _nf-core_-compatible module for the `tantan` software; would you like a pull request for it ?
`tantan` takes biological sequences in FASTA format as input and detects low-complexi…
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**Are you using the latest release?**
Version 1.8.14
**Describe the bug**
Running the tutorial for genome+RNAseq with our own data, we successfully get through most of the annotation stages.
…
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**Are you using the latest release?**
yes
**Describe the bug**
The training with Augustus is failing because UnboundLocalError: local variable 'AUGUSTUS_BASE' referenced before assignment
**Wh…
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Hi
**Are you using the latest release?**
Funannotate v1.8.7
**Describe the bug**
```
[Jul 14 09:23 PM]: OS: Linux Mint 20.2, 48 cores, ~ 132 GB RAM. Python: 3.7.12
[Jul 14 09:23 PM]: Runnin…
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I am using funannotate 1.8.9 version installed with conda (mamba).
"funannotate compare -i Genome_one.gbk Genome_two.gbk Genome_three.gbk -o compare --cpus 4 --outgroup botrytis_cinerea.dikarya
--…
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Hi Jon!
I have encountered a problem when running a new funannotate analysis with a new installation. As always, thank you so much for your help!
L.
**Are you using the latest release?**
I …
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```
6 input contigs, 6 larger than 500 bp, N50 is 427,039 bp
Checking duplication of 6 contigs
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scaffold_73 appears duplicated: 100% identity over 10…
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(funannotate) wangyuanbing@wangyb-System:~/Desktop/CZY/funannotate$ funannotate predict -i '/home/wangyuanbing/Desktop/CZY/funannotate/scaffolds_clean_sort_mask.fasta' --species "Hypocrella raciborski…
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**Are you using the latest release?**
Running 1.8.15
**Describe the bug**
A clear and concise description of what the bug is.
**What command did you issue?**
funannotate compare -i GCA_00014995…