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Hi,
I am trying to assign taxonomic ranks to novel MAGs that based on tree topology seem to represent several new species and 1 new family within the same phylum. To decorate the tree, I included g…
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A WoRMS aphiaID is a distinguishing feature. And the WoRMS classification includes an LSID based on the aphiaID.
WoRMS distinguishes between homonyms by concatenating the taxon name and the auth…
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EML 2.2 provides a [taxonId](https://eml.ecoinformatics.org/schema/eml-coverage_xsd.html#TaxonomicClassificationType_taxonId) field. A taxon ID is an identifier for a taxon from an authority. For exam…
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**Improvement Description**
[Taxon path padding](https://github.com/qiime2/q2-taxa/blob/2f9919e9f72dd923b2981c63f7f45da52216cd97/q2_taxa/_util.py#L27) can be made rank aware to avoid the following si…
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## The need
To annotate pan-genome genes, the user is encouraged to export from an existing pan-genome database via `anvi-get-sequences-for-gene-calls -g` and then annotate the genes via their own …
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I've noticed recently a number of entries at the [Nomenclature for Museum Cataloging](https://page.nomenclature.info/arbre-tree.app) (formerly Nomenclature 4.0) have changed from what we currently hav…
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Hi,
I was using Bracken to re-estimate reads at Class level for Eukaryotes. Now, there is a certain fish Order that I don't want included in the general fish Class, because it's the Order of my hos…
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@gsautter Catalogue of Life discontinued Reptilia. We need to check what the alternatives are, and what we need to do to react.
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The XRelease needs some richer algae classification to fill the gaps.
Discuss what to add and which source to take it from. Candidates:
In ChecklistBank
- [IRMNG](https://www.checklistbank.org/datas…
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**Many marine Siphonophora occurrences matched to milipedes**
Many marine Siphonophora occurrences are only given as genus Siphonophora which is a homonym and the accepted name are milipedes. From 11…