-
Where to upload:
And what files to upload:
edsu7 updated
3 months ago
-
I am attempting to work through your processing examples using my own data sets, and I do not recognize your transcriptome length file type in the run construct_batch pre-processing step (gg_200524_mo…
-
### Description of feature
[cellranger_count.py](https://github.com/nf-core/scrnaseq/blob/master/modules/nf-core/cellranger/count/templates/cellranger_count.py) currently just uses `subprocess.run` f…
-
Hi CAMISIM team,
First, thank you for developing and maintaining such a valuable tool! I am currently working with CAMI 2 challenge data sets and would like to simulate metatranscriptomes to accomp…
-
### Description of the bug
I used the assemblyQC to check the quality of transcripts in several published Pear genomes. The BUSCO completeness scores look good (>95% complete completeness). In the Kr…
-
https://legumeinfo.org/data/v2/Lupinus/albus/transcriptomes/
is an example. I don't load these into the mines, but a DS folder should have a spec here.
-
We have a logical question about the table specimen.tsv. There is a column that reads tumour_confirmed. For Donors where the column specimen_type in fact shows that the specimen was taken from tumorou…
-
There are actually two public transcritomes.
1. De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech
Raw sequence reads were submitt…
-
### Publication and Data Information
https://www.nature.com/articles/s41438-019-0194-7
### Additional Information
### Checklist
See [New Genome Documentation](https://github.com/mestato/staton…
-
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0082674
Email Jenny Xiang when done.