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I'm reaching out regarding an issue I encountered while using RNA-bloom version 2.0.1 in conjunction with JDK17. Specifically, I'm attempting to generate a de novo assembly using 32 samples of transcr…
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**Are you using the latest release?**
Yes
**Describe the bug**
I have switched to mysql from sqlite because sqlite takes so long to run. Train keeps failing at the PASA step, due to an inability …
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Hi,
I am interested in using long and short reads to assemble a transcriptome with RNA-Bloom2.
I had a few questions regarding pre-processing of reads before using RNA-Bloom2.
I am loosely fo…
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genrep4humans.py -a mm10 -i 2 -t chr17:69967073-70821413
will return a single sequence, but it would be much more useful to have the sequence from each transcript in the specified region separately (…
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Hi, me and my team are trying to do a project using the dataset linked below. We have tried downloading the dataset multiple times, but none have included the expression matrix .tsv file all we are ge…
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There are actually two public transcritomes.
1. De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech
Raw sequence reads were submitt…
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### Publication and Data Information
https://www.nature.com/articles/s41438-019-0194-7
### Additional Information
### Checklist
See [New Genome Documentation](https://github.com/mestato/staton…
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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0082674
Email Jenny Xiang when done.
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https://legumeinfo.org/data/v2/Lupinus/albus/transcriptomes/
is an example. I don't load these into the mines, but a DS folder should have a spec here.
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We have a logical question about the table specimen.tsv. There is a column that reads tumour_confirmed. For Donors where the column specimen_type in fact shows that the specimen was taken from tumorou…