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It would be useful for the `read_bgen` function to have arguments for custom metafile and sample paths. This should pass down to the [bgen_reader.read_bgen](https://bgen-reader.readthedocs.io/en/late…
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Review of first draft and content improvement
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Hello,
I am trying to generate signal intensity data from raw CEL files. My data is from the UK Biobank Axiom arrays by Affymetrix. I am presuming the correct instructions to follow are those speci…
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Hey @elswob @mcgml do you know what happens when a p-value is '0' in the original dataset?
It looks to me like they are converted to a -log10 value of 999: https://github.com/MRCIEU/gwas2vcf/blame…
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您好，感谢开发csMR!我对csMR非常感兴趣！
我在7.21日完全按照readme安装了csMR（目前Github最新版），在默认参数跑通example数据后，又用默认参数对BMI全染色体数据、8种脑细胞全染色体数据、全脑全染色体数据进行了测试（结局还是example的两套数据）。
但结果与原文Fig3的T2DM和CAD列有不同，具体阳性如下（P为IVW的P值）：
T2DM：全脑（…
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hello!I'm sorry to bother you！
When I run auto.update.variable.info,I found such erro,how can I solve it? thank you!
updated_info = auto.update.variable.info(old_variable_info, UKB_data_dictionary…
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I saw this when running a long job that writes Zarr archives on GS:
```
Traceback (most recent call last):
File "scripts/gwas.py", line 420, in
fire.Fire()
File "/home/eczech/repos/ukb…
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currently `datalad ukb-init -d . field1 field2` allows adding all fields a project has access to to a participant. however, we may only want to download incrementally. it would be nice if `ukb-update…
satra updated
4 years ago
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I am trying to run a workflow rule that creates a directory in GS, but Snakemake continually fails to recognize that the directory exists. The error message recommends using the `directory()` flag, w…
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- [ ] link to paper/mention COSGAP across main repos.
- [ ] improve usecase using UKB datas
- [x] Add proper citations to original research papers in table with tool overview (fix in documentation)
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