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(venv) family@nate-hp-g5:~/AI-powered-files-system-and-the-searching-framwork$ /home/family/AI-powered-files-system-and-the-searching-framwork/venv/bin/python /home/family/AI-powered-files-system-and-…
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Hi all,
The read_clustering step failed for whole operons (16S-ITS-23S, ~4.1k mean read length).
The whole nextflow pipeline ran through without errors (on a Mac M1) with test fastq files `mock4…
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I am following the tutorial steps, and have napari-tomotwin installed using the following command:
`mamba env create -n napari-tomotwin -f https://raw.githubusercontent.com/MPI-Dortmund/napari-tomotw…
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Thanks for the great R package, extremely useful! Wondering if it is possible to split the UMAP by condition in the cellinfo vs geneexp tab when we use the integrated object. Is it possible to retain …
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Hi, I'm trying to analyse 18 samples of public 10x Spatial data, using Seurat 5. My goal was to perform SCTransform on each sample, merge them, and eliminate batch effect of different slide (that was …
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Hi, Thanks again for your great tool,
I have a question regarding predefined Topics, whenver I add a list of **zeroshot_topic_list**, I got different generated topics and not the one I added, is th…
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I tried a clean installation of the repo on macOS with Python3.8:
```
brew install python@3.8
mkdir venv
python3.8 -m venv ./venv
source venv/bin/activate
python3 -m pip install --upgrade pip…
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Hi! thanks for implementing UMAP it's very handy!
When serializing a trained UMAP object via pickle I had the following error:
```python
pickle.dump(myumap, open('pickle.pkl', 'w'))
TypeError: a c…
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**Describe the bug**
The GPU-accelerated implementation from cuml can give **much worse results than the CPU alternative from the package [umap](https://umap-learn.readthedocs.io/en/latest/index.ht…
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I'm currently in the process of changing from Google My Maps to uMap.
When importing from MyMaps (KML file export) the layers and icons are not coming across. Also hidden layers are visible.
Here…