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When I run
`knit("PartIIphyloseq.rnw")`
I get:
`Warning messages:
1: In is.na(e1) | is.na(e2) :
longer object length is not a multiple of shorter object length
2: In`!=.default`(Phylum, c("", "un…
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Hello,
Going through the latest version of the paper and file, what are the mock samples used for? I'm referring to the Mock_S280 and Mock2_S366.
Thanks!
-Nina
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Hello,
Is there a way to perform Robust Aitchison PCA with this package in R? (See implementation in qiime2 here: https://library.qiime2.org/plugins/deicode/19/)
Thanks.
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Hi,
Happy new year!
Since the relative abundance is recommended to do beta diversity analysis, I used the following codes to transform our phyloseq object to relative abundance. But when I che…
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We will want to distribute our lessons widely, and it will be helpful to have structured metadata for the lessons to be used in search and discovery. The ESIP [Data Management Training Clearinghouse](…
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This is a copycat of [the crowdsource polling for a DADA2 logo](https://github.com/benjjneb/dada2/issues/352) that has generated some awesome suggestions and prototypes.
Would love to see user sugg…
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最近看了一些Git版本控制的资料,感觉我们还是经验不足,虽说使用上了Git这种高端的工具,但也是停留在最初级的层面上。
之前写了一些Git使用说明,其中由我的体会,也有从各类资料上找来的。现在觉得,与其抄一些内容,还不如把好资料推荐给大家。
强烈建议读一下Pro Git这本书,OSChina上有这本书的中文[电子版](http://git.oschina.net/progit/),把前三章读完…
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Hi Joey,
I have separate otu, taxa and meta files in txt and would like to combine those three files into a phyloseq object. Could you please suggest R scripts to combine those 3 files? Many thanks…
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Hi all,
I have a .biom file (generated by NGS analyses from a company) and i need to import it into qiime.
Can anyone help me?
Is it possible that the issue is the location of the file? I did not …
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This test is described and motivated here
### Test
If ePub readers cannot support getting the current pagination number of a passage, as it would appear in a book or journal article (e.g., PDF) av…