-
From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1645
KP.2.3+C28714T+A1087G+A23166C(S:K535T)
GISAID query: C28714T,A1087G,A23166C
No. of seqs: 37(USA 3 France 1 Spain 1 UK 32)…
-
It seems that issues with the server used for training the model of pangoLEARN (https://github.com/cov-lineages/pangolin-data/releases/tag/v1.19) cannot be solved in a short time. Besides, an assignme…
-
KP.4+C10969T, A26579G,C23277T(S:T572I)+G174T+G22865T(S:A435S)
2 of the recent French seqs have their Orf10 start codon destroyed.
GISAID query: G22865T,C23277T,G174T
No. of seqs: 7(Canada 1 UK …
-
KP.3.1.1+G24095T(S:A845S)
GISAID query: G24095T,A13121T,C12616T
No. of seqs: 9(USA 1 Germany 1 France 1 Canada 3 Spain 3)
First: EPI_ISL_19195090, Spain, 2024-5-29
Latest: EPI_ISL_19240664, US…
-
As discussed in (https://github.com/cov-lineages/pango-designation/issues/1940), I suggest "whole tree" mode for those who wish to browse through the whole usher tree (and see its various data arrange…
-
Take from CogSci paper with Jan. Since it worked pretty well, this would be a nice network to showcase some larger dynamical examples potentially.
-
KP.3.1+C21812A, C29416A(S:L84I)
GISAID query: C21812A, C29416A, G15372T
No. of seqs: 17(Canada 1 UK 5 Ireland 2 USA 9(2 from Austria, 2 from Turkey))
First: EPI_ISL_19162555, USA from Austria, …
-
Sub-lineage of:KP.3.3
Earliest sequence:2024-05-30|USA|EPI_ISL_19195596
Most recent sequence:2024-06-18|USA|EPI_ISL_19234115
Countries circulating:USA(3), Italy(1), Germany(1), Greece (1 via GBW)
…
-
Running these tools in default UShER mode.
- pangolin v4.0.6
- pangolin-data v1.8
- constellations v0.1.9
- scorpio v0.3.17
Many sequences that should be XD (labelled clade GKA on GISAID) are g…
-