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Hi there,
I am trying to run the pipeline on some older fastq files (circa 2010s) using the docker profile. The reads for the files are relatively short at ~75bp. Following previous advice from Abh…
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### DB Selector
DB3K
### Affected DBID(s)
3373 3374 3375 3376 4315 4316
### Summary of Changes
- [ ] Suggest setting the CEP to **20m** rather than 300m
- [ ] Add **Beidou/COMPASS** to…
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When access haplotypes data, there are cases where there are no data for a given sample set and analysis, e.g., for the "arab" analysis where a sample set has no arabiensis samples. Currently the appr…
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Hi Prof. Xijin,
I am proposing to use iDEP for pathway analysis in a multi-omics model. We have RNA seq gene expression, DNA methylation and genetic variants SNPs data. I am wondering if I can use…
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Is this the genotype of the probe or the reference? I believe it is the probe.... is there a way to add the reference genotype to it? Thank you.
from IlluminaBeadArrayFiles import GenotypeCall…
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Android has many unique formats such as:
- DEX
- OAT
- ART
- ODEX
- Other binary XML formats
We need to get a good handle on what these are and how they relate to the other formats to decide aht to d…
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Currently the workflow can take up to 15 hours for two months of emulators with 100k variants. Improving and shortening the time needed to run an analysis can be very beneficial. Some current ideas fo…
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https://jira.fsm.northwestern.edu/browse/RW-5513
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Hi @joellembatchou,
So I'm running regenie for UKB data while using the burden/skat-o options.
I was wondering if there's any workaround to include variants in which the REF allele is actually …