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There is a method for finding Variant Annotation Sets by their ID, but not Variant Annotations themselves. Is this intended?
https://github.com/ga4gh/schemas/blob/variation_annotation/src/main/resour…
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The question of use cases for the variant annotation API came up on yesterday's call so we thought it would be good to create an issue to share ideas.
As well as the approach discussed - querying for…
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**Is your feature request related to a problem? Please describe.**
Currently user annotations of variants overwrite previous ones (except for comments). We need to store a history of the changes,…
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Hi, With the latest version of gatk 4.6.0 and the latest funcotator v1.8 annotation, all Clinvar fields are returning blank, even though there are many variants that I know are in clinvar. Seems like …
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Hi,
When I use the abraom annotation, for most variants it gives me 3 columns, but for some variants the abraom annotation returns two columns in the .txt file, and a truncated .vcf result (stopped a…
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Wondering if there is a VarNote-REG and VarNote-PAT command line jar option? I don't see anything when using just the VarNote.jar file
```
$ java -jar VarNote-1.1.0.jar
USAGE: java -jar /path/to/…
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Created new package `X` (main goal is ship `twMerge`/[tailwind-merge](https://www.npmjs.com/package/tailwind-merge) and `tv/tailwind-variants` with custom [twMergeConfig](https://www.tailwind-variants…
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Assignment instructions:
- [x] Align the reads to hg19 build 37 genome
- [x] Generate quality statistics from the fastq or bam file using your tool of choice.
- [x] Call variants for the regions in…
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* Search for / create a variant that is very long, eg 22:21802790-22555544 is 752kb long
* Load the variant page
It appears to hang, seems to be inside ```VariantTranscriptSelections._add_other_anno…
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Hello ,
I am trying to run structural variants annotations using annovar. Do annovar support it? If so can u help me with how to toggle structural variants input so the algorithm can get that?
R…