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Hi there,
I annotated a VCF of Clinvar variants using vcfanno and would like to create a database using vcf2db. However, there are no samples in the VCF. I tried adding a fake sample in the header …
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Based on the findings of the DDD paper, we would like to be able to filter for the following variant annotations created by the VEP SpliceRegion plugin
```
splice_donor_5th_base_variant
splice_do…
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Since dbSNP vcf is huge (15G) from https://ftp.ncbi.nih.gov/snp/latest_release/VCF/ .
I want to use slivar to annotate `RS`
```
##INFO=
```
use origin file `GCF_000001405.25.gz`, I got error mess…
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Hi Brent,
I was trying to annotate 1KGP VCFs with genotype information of archaic hominins (e.g., Altai Neanderthal). These individuals have a lot of sites that are homozygous for the reference all…
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I'm using VCF anno to annotate a INFO field of the float datatype:
Input infofield:
```
##INFO=
```
The resource contains values for this INFO field like:
1.4696171E-4
0.13309044
7.423004E-5
…
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Hi @brentp
could you give some new features that I can use my own Description field in postannotation.
**This is the config.toml**
```
[[annotation]]
file="hg19_dbscsnv11.vcf.gz"
fields=["dbscS…
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Hi,
Just used bcbio-nextgen for the first time. We would like to use octopus for 10 WGS variant calling and would like to have a multisample vcf. In the bcbio next-gen doc we saw that the jointcall…
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**Is your feature request related to a problem? Please describe.**
Variant calling procedure infers genotype from positive and negative strand for paired end reads. The genotype can be different betw…
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I made some gnotate files for the CADD. This is using slivar 0.2.1.
I first transformed the cadd tsv files to vcf (using your old cadd2vcf.py script from vcfanno) then used
`slivar make-gnotate -…
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### Question
If the VCF record overlaps with many items from the annotation file, is it possible to annotate the VCF record with multiple rows from the file?
It seems like vembrane only returns one …