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Hey, thanks for the update to 1.16.2.
As a server owner on a server which uses WDL-Companion in order to restrict players the download of the world, it would be nice, if your application would supp…
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Agree upon, and document conventions:
* consistent scheme for controlling vg docker image version throughout workflows
* tasks/workflows factorization, and import directories
* camel-casing vs un…
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**Is your feature request related to a problem? Please describe.**
Workflows with HTTP imports are not very reproducible. It should be discouraged.
**Describe the solution you'd like**
Add to the bes…
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Included bbcms outputs to output section of workflow.
https://github.com/microbiomedata/metaAssembly/blob/58c8ad7868c74157bcfdd7022421aadb9d34f646/jgi_assembly.wdl#L103C11-L103C52
- [ ] bump ve…
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For string-to-file coercion, MiniWDL is content with a nonexistent file if the variable is never used. For example:
```wdl
version 1.1
workflow wf {
input {
File f = "path/to/file"
}
…
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It would be good if files in WDL workflows were deleted from the job store when they can no longer be accessed by any remaining jobs.
We could add nodes to the workflow graph to delete File values, a…
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### Feature Request
This issue is a solicitation for feedback on an idea.
I've been working on the [RSV pipeline](https://github.com/CDPHE-bioinformatics/CDPHE-RSV) and reusing tasks from this r…
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see if there's existing solutions.
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- 中间文件(json?)是否可以与cwl对接
- 或许可以利用WDLParser.java和其他开源工具
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The restructured pipeline in this repo is called now as automatic genome-sequence analysis pipeline or agape for short, presented the following major changes based on the main repo:
Use a unified d…