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Hi Sigve
Thanks for another awesome framework. We (@umccr) are very much interested to incorporate this into our reporting.
I have looked at the github repo/code and tested it locally - it works…
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Hi,
First, i deeply appreciate you for the powerful tool. But, I found many dots existed in amino acid sequences when I used the liftoff. Is It mean that a pseudo-genes ?
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I am comparing a lifted over gtf file from LiftOff with the reference gtf using liftofftools, but get this error:
`gffutils database build failed with UNIQUE constraint failed: features.id`
The co…
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Add parallel support for creating seqMeta objects.
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User reported: https://groups.google.com/u/1/g/cbioportal/c/T-QlXI66WRU
Querying for TERT:DRIVER in GENIE can result in an alteration frequency >100% (see Desmoplastic Melanoma here: https://genie.…
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Allow GCI users to see useful VCI information about variants.
When users add in a Variant ID, see if there is a VCI interpretation for the variant. For display of variant, the suggestion is to use …
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Initial notes on proposed scope and definition of these VA type, based on requirements and considerations documented [here](https://docs.google.com/document/d/1J4AqGDEqyK8KAzfiowgHYKJNvzHuwHSHgkN9dleL…
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Hi all, thanks for the the amazing pipeline to annotate the variants. However I am having some difficulties in run it, although I am testing it with the data you provide. After some manual bug-fixing …
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Spin off of a tangential question that arose in #240
, namely:
> What are the plain language semantics of the assertions represented in SPOKE Edges created from on CIViC records? And what SPO struc…
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I'm trying to estimate parameters for finemapping and for some reason I the first iteration estimates the gene prior to be zero:
```
ctwas::ctwas_rss(
z_gene = z_gene_subset,
…