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Jen: Scripts in the GUI commonly ask users to browse for a folder. Need an example on Mac +Windows of how to do this.
Use code in GUI script:
`resultsFolderCMC = utils.FileUtils.getInstance().brow…
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> I checked Biocondcutor and there were only 31 packages with the "metabolomics" search term.
> I removed some that were not obviously related. Attached is a list, but some of those may not be as rel…
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There are 29 pseudogenes discovered in the HMR2 model based on the Ensembl annotation. Pseudogenes are identified with disruptions in ORF (frameshift, early stop codon). Given that most pseudogenes ar…
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Previously, if a user is not logged in and tries to access any service, a login form was displayed. It looked like we did some changes lately and it's confusing/problematic for some services now:
A…
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We have made a bunch of changes to core and GUI since the last time we did user testing of the GUI. We should use the GUI artifact for the sets change. Download it by clicking "Details" next to "appve…
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Hi
I had created several models using following workflow
carve Enterococcus_faecium_EF2_pro --fbc2 -o Enterococcus_faecium_EF2.xml
then i tried to merge them, to create a community model, bu…
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For some reactions, like '[activated human TAK1 phosphorylates MKK3/MKK6](https://reactome.org/PathwayBrowser/#/R-HSA-450294&SEL=R-HSA-450346&PATH=R-HSA-168256,R-HSA-168249,R-HSA-168898,R-HSA-168164)'…
goodb updated
5 years ago
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Jen: Users need examples to show key GUI scripting functionality and at minimum any examples we distribute should work without bugs
### Steps to reproduce
Try to run runtutorialOne.py GUI script f…
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According to relationship reasoning in the [docs](http://geneontology.org/page/ontology-relations) if A **part_of** B **is_a** C then A **part_of** C. But this does not seem to hold in the following e…
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Hi Daniel,
As mentioned before, I am currently in the process of comparing pipelines to construct metabolic models. In order to perform a fair benchmark, I want to export the universal model of Ca…